diff --git a/annotated-projects/PXD013737/PXD013737.sdrf.tsv b/annotated-projects/PXD013737/PXD013737.sdrf.tsv index 9f27efc5..431c13fe 100644 --- a/annotated-projects/PXD013737/PXD013737.sdrf.tsv +++ b/annotated-projects/PXD013737/PXD013737.sdrf.tsv @@ -1,97 +1,97 @@ -source name characteristics[organism] characteristics[organism part] characteristics[age] characteristics[developmental stage] characteristics[sex] characteristics[disease] characteristics[cell type] characteristics[cell line] characteristics[individual] characteristics[phenotype] characteristics[specimen] characteristics[biological replicate] characteristics[ancestry category] material type assay name technology type comment[file uri] comment[fractionation method] comment[fraction identifier] comment[data file] comment[label] comment[technical replicate] comment[instrument] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[cleavage agent details] comment[dissociation method] comment[collision energy] comment[precursor mass tolerance] comment[fragment mass tolerance] factor value[phenotype] -Sample 1 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 1 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_01.raw 1 20170929_MT_Celine_90m_01.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 1 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 2 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_02.raw 2 20170929_MT_Celine_90m_02.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:36 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 1 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 3 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_03.raw 3 20170929_MT_Celine_90m_03.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:37 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 1 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 4 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_04.raw 4 20170929_MT_Celine_90m_04.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:38 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 2 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 5 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_05.raw 1 20170929_MT_Celine_90m_05.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:39 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 2 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 6 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_06.raw 2 20170929_MT_Celine_90m_06.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:40 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 2 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 7 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_07.raw 3 20170929_MT_Celine_90m_07.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:41 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 2 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 8 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_08.raw 4 20170929_MT_Celine_90m_08.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:42 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 3 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 9 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_09.raw 1 20170929_MT_Celine_90m_09.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:43 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 3 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 10 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_10.raw 2 20170929_MT_Celine_90m_10.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:44 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 3 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 11 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_11.raw 3 20170929_MT_Celine_90m_11.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:45 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 3 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 12 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_12.raw 4 20170929_MT_Celine_90m_12.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:46 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 4 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 13 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_13.raw 1 20170929_MT_Celine_90m_13.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:47 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 4 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 14 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_14.raw 2 20170929_MT_Celine_90m_14.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:48 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 4 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 15 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_15.raw 3 20170929_MT_Celine_90m_15.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:49 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 4 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 16 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_16.raw 4 20170929_MT_Celine_90m_16.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:50 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 5 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 17 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_17.raw 1 20170929_MT_Celine_90m_17.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:51 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 5 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 18 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_18.raw 2 20170929_MT_Celine_90m_18.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:52 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 5 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 19 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_19.raw 3 20170929_MT_Celine_90m_19.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:53 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 5 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 20 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_20.raw 4 20170929_MT_Celine_90m_20.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:54 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 6 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 21 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_21.raw 1 20170929_MT_Celine_90m_21.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:55 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 6 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 22 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_22.raw 2 20170929_MT_Celine_90m_22.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:56 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 6 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 23 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_23.raw 3 20170929_MT_Celine_90m_23.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:57 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 6 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 24 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_24.raw 4 20170929_MT_Celine_90m_24.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:58 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 7 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 25 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_25.raw 1 20170929_MT_Celine_90m_25.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:59 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 7 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 26 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_26.raw 2 20170929_MT_Celine_90m_26.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:60 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 7 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 27 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_27.raw 3 20170929_MT_Celine_90m_27.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:61 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 7 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 28 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_28.raw 4 20170929_MT_Celine_90m_28.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:62 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 8 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 29 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_29.raw 1 20170929_MT_Celine_90m_29.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:63 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 8 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 30 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_30.raw 2 20170929_MT_Celine_90m_30.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:64 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 8 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 31 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_31.raw 3 20170929_MT_Celine_90m_31.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:65 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 8 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 32 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_32.raw 4 20170929_MT_Celine_90m_32.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:66 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 9 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 33 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_33.raw 1 20170929_MT_Celine_90m_33.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:67 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 9 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 34 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_34.raw 2 20170929_MT_Celine_90m_34.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:68 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 9 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 35 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_35.raw 3 20170929_MT_Celine_90m_35.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:69 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 9 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 36 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_36.raw 4 20170929_MT_Celine_90m_36.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:70 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 10 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 37 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_37.raw 1 20170929_MT_Celine_90m_37.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:71 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 10 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 38 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_38.raw 2 20170929_MT_Celine_90m_38.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:72 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 10 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 39 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_39.raw 3 20170929_MT_Celine_90m_39.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:73 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 10 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 40 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_40.raw 4 20170929_MT_Celine_90m_40.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:74 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 11 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 41 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_41.raw 1 20170929_MT_Celine_90m_41.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:75 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 11 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 42 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_42.raw 2 20170929_MT_Celine_90m_42.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:76 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 11 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 43 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_43.raw 3 20170929_MT_Celine_90m_43.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:77 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 11 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 44 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_44.raw 4 20170929_MT_Celine_90m_44.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:78 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 12 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 45 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_45.raw 1 20170929_MT_Celine_90m_45.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:79 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 12 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 46 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_46.raw 2 20170929_MT_Celine_90m_46.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:80 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 12 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 47 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_47.raw 3 20170929_MT_Celine_90m_47.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:81 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 12 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 48 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_48.raw 4 20170929_MT_Celine_90m_48.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:82 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 13 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 49 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_49.raw 1 20170929_MT_Celine_90m_49.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:83 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 13 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 50 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_50.raw 2 20170929_MT_Celine_90m_50.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:84 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 13 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 51 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_51.raw 3 20170929_MT_Celine_90m_51.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:85 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 13 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 52 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_52.raw 4 20170929_MT_Celine_90m_52.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:86 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 14 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 53 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_53.raw 1 20170929_MT_Celine_90m_53.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:87 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 14 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 54 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_54.raw 2 20170929_MT_Celine_90m_54.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:88 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 14 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 55 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_55.raw 3 20170929_MT_Celine_90m_55.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:89 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 14 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 56 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_56.raw 4 20170929_MT_Celine_90m_56.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:90 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 15 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 57 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_57.raw 1 20170929_MT_Celine_90m_57.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:91 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 15 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 58 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_58.raw 2 20170929_MT_Celine_90m_58.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:92 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 15 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 59 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_59.raw 3 20170929_MT_Celine_90m_59.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:93 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 15 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 60 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_60.raw 4 20170929_MT_Celine_90m_60.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:94 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 16 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 61 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_61.raw 1 20170929_MT_Celine_90m_61.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:95 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 16 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 62 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_62.raw 2 20170929_MT_Celine_90m_62.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:96 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 16 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 63 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_63.raw 3 20170929_MT_Celine_90m_63.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:97 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 16 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 64 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_64.raw 4 20170929_MT_Celine_90m_64.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:98 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control -Sample 17 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 65 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_65.raw 1 20170929_MT_Celine_90m_65.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:99 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 17 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 66 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_66.raw 2 20170929_MT_Celine_90m_66.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:100 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 17 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 67 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_67.raw 3 20170929_MT_Celine_90m_67.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:101 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 17 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 68 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_68.raw 4 20170929_MT_Celine_90m_68.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:102 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 18 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 69 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_69.raw 1 20170929_MT_Celine_90m_69.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:103 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 18 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 70 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_70.raw 2 20170929_MT_Celine_90m_70.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:104 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 18 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 71 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_71.raw 3 20170929_MT_Celine_90m_71.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:105 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 18 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 72 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_72.raw 4 20170929_MT_Celine_90m_72.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:106 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 19 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 73 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_73.raw 1 20170929_MT_Celine_90m_73.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:107 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 19 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 74 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_74.raw 2 20170929_MT_Celine_90m_74.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:108 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 19 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 75 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_75.raw 3 20170929_MT_Celine_90m_75.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:109 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 19 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 76 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_76.raw 4 20170929_MT_Celine_90m_76.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:110 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 20 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 77 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_77.raw 1 20170929_MT_Celine_90m_77.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:111 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 20 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 78 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_78.raw 2 20170929_MT_Celine_90m_78.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:112 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 20 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 79 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_79.raw 3 20170929_MT_Celine_90m_79.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:113 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 20 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 80 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_80.raw 4 20170929_MT_Celine_90m_80.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:114 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant -Sample 21 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 81 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_81.raw 1 20170929_MT_Celine_90m_81.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:115 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 21 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 82 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_82.raw 2 20170929_MT_Celine_90m_82.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:116 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 21 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 83 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_83.raw 3 20170929_MT_Celine_90m_83.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:117 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 21 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 84 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_84.raw 4 20170929_MT_Celine_90m_84.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:118 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 22 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 85 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_85.raw 1 20170929_MT_Celine_90m_85.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:119 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 22 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 86 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_86.raw 2 20170929_MT_Celine_90m_86.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:120 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 22 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 87 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_87.raw 3 20170929_MT_Celine_90m_87.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:121 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 22 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 88 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_88.raw 4 20170929_MT_Celine_90m_88.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:122 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 23 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 89 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_89.raw 1 20170929_MT_Celine_90m_89.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:123 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 23 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 90 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_90.raw 2 20170929_MT_Celine_90m_90.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:124 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 23 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 91 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_91.raw 3 20170929_MT_Celine_90m_91.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:125 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 23 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 92 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_92.raw 4 20170929_MT_Celine_90m_92.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:126 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 24 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 93 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_93.raw 1 20170929_MT_Celine_90m_93.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:127 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 24 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 94 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_94.raw 2 20170929_MT_Celine_90m_94.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:128 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 24 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 95 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_95.raw 3 20170929_MT_Celine_90m_95.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:129 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant -Sample 24 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 96 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_96.raw 4 20170929_MT_Celine_90m_96.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:130 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +source name characteristics[organism] characteristics[organism part] characteristics[age] characteristics[developmental stage] characteristics[sex] characteristics[disease] characteristics[cell type] characteristics[cell line] characteristics[individual] characteristics[phenotype] characteristics[specimen] characteristics[biological replicate] characteristics[ancestry category] material type assay name technology type comment[file uri] comment[fraction identifier] comment[data file] comment[label] comment[technical replicate] comment[instrument] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[cleavage agent details] comment[dissociation method] comment[collision energy] comment[precursor mass tolerance] comment[fragment mass tolerance] factor value[phenotype] +Sample 1 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 1 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_01.raw 1 20170929_MT_Celine_90m_01.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 1 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 2 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_02.raw 2 20170929_MT_Celine_90m_02.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:36 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 1 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 3 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_03.raw 3 20170929_MT_Celine_90m_03.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:37 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 1 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 4 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_04.raw 4 20170929_MT_Celine_90m_04.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:38 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 2 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 5 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_05.raw 1 20170929_MT_Celine_90m_05.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:39 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 2 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 6 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_06.raw 2 20170929_MT_Celine_90m_06.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:40 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 2 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 7 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_07.raw 3 20170929_MT_Celine_90m_07.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:41 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 2 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 8 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_08.raw 4 20170929_MT_Celine_90m_08.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:42 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 3 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 9 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_09.raw 1 20170929_MT_Celine_90m_09.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:43 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 3 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 10 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_10.raw 2 20170929_MT_Celine_90m_10.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:44 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 3 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 11 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_11.raw 3 20170929_MT_Celine_90m_11.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:45 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 3 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 12 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_12.raw 4 20170929_MT_Celine_90m_12.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:46 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 4 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 13 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_13.raw 1 20170929_MT_Celine_90m_13.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:47 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 4 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 14 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_14.raw 2 20170929_MT_Celine_90m_14.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:48 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 4 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 15 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_15.raw 3 20170929_MT_Celine_90m_15.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:49 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 4 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 16 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_16.raw 4 20170929_MT_Celine_90m_16.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:50 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 5 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 17 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_17.raw 1 20170929_MT_Celine_90m_17.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:51 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 5 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 18 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_18.raw 2 20170929_MT_Celine_90m_18.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:52 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 5 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 19 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_19.raw 3 20170929_MT_Celine_90m_19.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:53 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 5 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 20 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_20.raw 4 20170929_MT_Celine_90m_20.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:54 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 6 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 21 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_21.raw 1 20170929_MT_Celine_90m_21.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:55 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 6 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 22 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_22.raw 2 20170929_MT_Celine_90m_22.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:56 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 6 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 23 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_23.raw 3 20170929_MT_Celine_90m_23.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:57 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 6 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 24 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_24.raw 4 20170929_MT_Celine_90m_24.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:58 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 7 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 25 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_25.raw 1 20170929_MT_Celine_90m_25.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:59 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 7 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 26 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_26.raw 2 20170929_MT_Celine_90m_26.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:60 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 7 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 27 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_27.raw 3 20170929_MT_Celine_90m_27.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:61 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 7 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 28 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_28.raw 4 20170929_MT_Celine_90m_28.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:62 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 8 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 29 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_29.raw 1 20170929_MT_Celine_90m_29.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:63 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 8 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 30 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_30.raw 2 20170929_MT_Celine_90m_30.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:64 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 8 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 31 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_31.raw 3 20170929_MT_Celine_90m_31.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:65 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 8 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 32 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_32.raw 4 20170929_MT_Celine_90m_32.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:66 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 9 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 33 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_33.raw 1 20170929_MT_Celine_90m_33.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:67 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 9 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 34 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_34.raw 2 20170929_MT_Celine_90m_34.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:68 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 9 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 35 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_35.raw 3 20170929_MT_Celine_90m_35.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:69 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 9 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 36 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_36.raw 4 20170929_MT_Celine_90m_36.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:70 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 10 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 37 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_37.raw 1 20170929_MT_Celine_90m_37.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:71 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 10 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 38 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_38.raw 2 20170929_MT_Celine_90m_38.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:72 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 10 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 39 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_39.raw 3 20170929_MT_Celine_90m_39.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:73 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 10 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 40 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_40.raw 4 20170929_MT_Celine_90m_40.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:74 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 11 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 41 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_41.raw 1 20170929_MT_Celine_90m_41.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:75 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 11 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 42 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_42.raw 2 20170929_MT_Celine_90m_42.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:76 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 11 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 43 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_43.raw 3 20170929_MT_Celine_90m_43.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:77 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 11 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 44 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_44.raw 4 20170929_MT_Celine_90m_44.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:78 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 12 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 45 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_45.raw 1 20170929_MT_Celine_90m_45.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:79 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 12 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 46 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_46.raw 2 20170929_MT_Celine_90m_46.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:80 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 12 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 47 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_47.raw 3 20170929_MT_Celine_90m_47.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:81 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 12 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 48 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_48.raw 4 20170929_MT_Celine_90m_48.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:82 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 13 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 49 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_49.raw 1 20170929_MT_Celine_90m_49.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:83 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 13 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 50 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_50.raw 2 20170929_MT_Celine_90m_50.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:84 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 13 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 51 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_51.raw 3 20170929_MT_Celine_90m_51.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:85 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 13 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 52 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_52.raw 4 20170929_MT_Celine_90m_52.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:86 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 14 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 53 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_53.raw 1 20170929_MT_Celine_90m_53.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:87 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 14 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 54 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_54.raw 2 20170929_MT_Celine_90m_54.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:88 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 14 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 55 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_55.raw 3 20170929_MT_Celine_90m_55.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:89 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 14 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 56 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_56.raw 4 20170929_MT_Celine_90m_56.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:90 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 15 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 57 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_57.raw 1 20170929_MT_Celine_90m_57.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:91 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 15 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 58 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_58.raw 2 20170929_MT_Celine_90m_58.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:92 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 15 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 59 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_59.raw 3 20170929_MT_Celine_90m_59.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:93 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 15 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 60 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_60.raw 4 20170929_MT_Celine_90m_60.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:94 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 16 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 61 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_61.raw 1 20170929_MT_Celine_90m_61.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:95 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 16 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 62 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_62.raw 2 20170929_MT_Celine_90m_62.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:96 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 16 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 63 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_63.raw 3 20170929_MT_Celine_90m_63.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:97 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 16 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 1 not applicable Cell line run 64 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_64.raw 4 20170929_MT_Celine_90m_64.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:98 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm Control +Sample 17 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 65 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_65.raw 1 20170929_MT_Celine_90m_65.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:99 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 17 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 66 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_66.raw 2 20170929_MT_Celine_90m_66.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:100 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 17 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 67 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_67.raw 3 20170929_MT_Celine_90m_67.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:101 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 17 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 68 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_68.raw 4 20170929_MT_Celine_90m_68.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:102 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 18 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 69 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_69.raw 1 20170929_MT_Celine_90m_69.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:103 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 18 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 70 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_70.raw 2 20170929_MT_Celine_90m_70.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:104 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 18 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 71 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_71.raw 3 20170929_MT_Celine_90m_71.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:105 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 18 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 72 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_72.raw 4 20170929_MT_Celine_90m_72.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:106 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 19 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 73 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_73.raw 1 20170929_MT_Celine_90m_73.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:107 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 19 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 74 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_74.raw 2 20170929_MT_Celine_90m_74.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:108 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 19 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 75 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_75.raw 3 20170929_MT_Celine_90m_75.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:109 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 19 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 76 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_76.raw 4 20170929_MT_Celine_90m_76.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:110 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 20 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 77 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_77.raw 1 20170929_MT_Celine_90m_77.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:111 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 20 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 78 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_78.raw 2 20170929_MT_Celine_90m_78.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:112 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 20 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 79 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_79.raw 3 20170929_MT_Celine_90m_79.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:113 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 20 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 2 not applicable Cell line run 80 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_80.raw 4 20170929_MT_Celine_90m_80.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:114 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm DBD_Mutant +Sample 21 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 81 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_81.raw 1 20170929_MT_Celine_90m_81.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:115 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 21 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 82 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_82.raw 2 20170929_MT_Celine_90m_82.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:116 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 21 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 83 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_83.raw 3 20170929_MT_Celine_90m_83.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:117 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 21 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 84 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_84.raw 4 20170929_MT_Celine_90m_84.raw AC=MS:1002038;NT=label free sample 1 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:118 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 22 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 85 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_85.raw 1 20170929_MT_Celine_90m_85.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:119 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 22 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 86 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_86.raw 2 20170929_MT_Celine_90m_86.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:120 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 22 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 87 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_87.raw 3 20170929_MT_Celine_90m_87.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:121 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 22 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 88 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_88.raw 4 20170929_MT_Celine_90m_88.raw AC=MS:1002038;NT=label free sample 2 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:122 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 23 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 89 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_89.raw 1 20170929_MT_Celine_90m_89.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:123 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 23 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 90 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_90.raw 2 20170929_MT_Celine_90m_90.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:124 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 23 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 91 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_91.raw 3 20170929_MT_Celine_90m_91.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:125 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 23 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 92 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_92.raw 4 20170929_MT_Celine_90m_92.raw AC=MS:1002038;NT=label free sample 3 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:126 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 24 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 93 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_93.raw 1 20170929_MT_Celine_90m_93.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:127 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 24 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 94 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_94.raw 2 20170929_MT_Celine_90m_94.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:128 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 24 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 95 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_95.raw 3 20170929_MT_Celine_90m_95.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:129 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant +Sample 24 Homo sapiens liver not available not available not available not available Hepatic stem progenitor cells pluripotent stem cell line not available Healthy not available 3 not applicable Cell line run 96 proteomic profiling by mass spectrometry https://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013737/20170929_MT_Celine_90m_96.raw 4 20170929_MT_Celine_90m_96.raw AC=MS:1002038;NT=label free sample 4 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Acetyl;AC=UNIMOD:1;PP=PP=Any N-term;MT=Variable NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:130 AC=MS:1001251;NT=Trypsin AC=MS:1000422;NT=HCD not available 6 ppm 20 ppm SUMO_Mutant \ No newline at end of file diff --git a/annotated-projects/PXD013753/PXD013753.sdrf.tsv b/annotated-projects/PXD013753/PXD013753.sdrf.tsv index 6f5da513..55c6a40d 100644 --- a/annotated-projects/PXD013753/PXD013753.sdrf.tsv +++ b/annotated-projects/PXD013753/PXD013753.sdrf.tsv @@ -1,161 +1,161 @@ -source name assay name characteristics[organism] characteristics[organism part] comment[region] characteristics[cell type] characteristics[age] characteristics[ancestry category] characteristics[sex] characteristics[disease] characteristics[biological replicate] characteristics[individual] comment[proteomexchange accession number] comment[data file] comment[file uri] comment[batch] comment[fraction identifier] characteristics[technical replicate] characteristics[pooled sample] comment[label] comment[apoE.status] comment[sample] comment[broadman area] comment[instrument] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[cleavage agent details] comment[fragment mass tolerance] comment[precursor mass tolerance] factor value[disease] -Sample 1 run 1 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 1 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013753/TW-1.raw 1 1 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 1 run 2 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 1 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013754/TW-1.raw 1 1 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 1 run 3 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 1 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013755/TW-1.raw 1 1 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 1 run 4 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 1 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013756/TW-1.raw 1 1 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 1 run 5 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 1 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013757/TW-1.raw 1 1 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 1 run 6 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 1 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013758/TW-1.raw 1 1 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 1 run 7 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 1 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013759/TW-1.raw 1 1 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 1 run 8 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 1 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013760/TW-1.raw 1 1 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 2 run 9 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 2 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013761/TW-2.raw 1 2 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 2 run 10 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 2 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013762/TW-2.raw 1 2 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 2 run 11 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 2 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013763/TW-2.raw 1 2 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 2 run 12 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 2 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013764/TW-2.raw 1 2 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 2 run 13 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 2 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013765/TW-2.raw 1 2 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 2 run 14 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 2 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013766/TW-2.raw 1 2 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 2 run 15 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 2 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013767/TW-2.raw 1 2 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 2 run 16 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 2 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013768/TW-2.raw 1 2 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 3 run 17 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 3 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013769/TW-3.raw 1 3 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 3 run 18 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 3 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013770/TW-3.raw 1 3 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 3 run 19 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 3 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013771/TW-3.raw 1 3 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 3 run 20 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 3 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013772/TW-3.raw 1 3 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 3 run 21 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 3 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013773/TW-3.raw 1 3 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 3 run 22 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 3 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013774/TW-3.raw 1 3 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 3 run 23 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 3 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013775/TW-3.raw 1 3 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 3 run 24 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 3 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013776/TW-3.raw 1 3 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 4 run 25 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 4 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013777/TW-4.raw 1 4 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 4 run 26 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 4 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013778/TW-4.raw 1 4 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 4 run 27 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 4 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013779/TW-4.raw 1 4 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 4 run 28 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 4 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013780/TW-4.raw 1 4 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 4 run 29 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 4 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013781/TW-4.raw 1 4 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 4 run 30 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 4 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013782/TW-4.raw 1 4 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 4 run 31 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 4 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013783/TW-4.raw 1 4 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 4 run 32 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 4 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013784/TW-4.raw 1 4 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 5 run 33 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 5 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013785/TW-5.raw 1 5 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 5 run 34 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 5 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013786/TW-5.raw 1 5 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 5 run 35 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 5 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013787/TW-5.raw 1 5 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 5 run 36 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 5 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013788/TW-5.raw 1 5 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 5 run 37 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 5 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013789/TW-5.raw 1 5 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 5 run 38 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 5 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013790/TW-5.raw 1 5 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 5 run 39 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 5 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013791/TW-5.raw 1 5 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 5 run 40 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 5 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013792/TW-5.raw 1 5 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 6 run 41 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 6 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013793/TW-6.raw 1 6 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 6 run 42 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 6 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013794/TW-6.raw 1 6 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 6 run 43 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 6 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013795/TW-6.raw 1 6 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 6 run 44 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 6 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013796/TW-6.raw 1 6 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 6 run 45 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 6 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013797/TW-6.raw 1 6 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 6 run 46 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 6 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013798/TW-6.raw 1 6 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 6 run 47 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 6 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013799/TW-6.raw 1 6 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 6 run 48 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 6 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013800/TW-6.raw 1 6 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 7 run 49 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 7 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013801/TW-7.raw 1 7 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 7 run 50 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 7 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013802/TW-7.raw 1 7 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 7 run 51 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 7 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013803/TW-7.raw 1 7 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 7 run 52 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 7 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013804/TW-7.raw 1 7 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 7 run 53 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 7 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013805/TW-7.raw 1 7 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 7 run 54 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 7 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013806/TW-7.raw 1 7 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 7 run 55 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 7 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013807/TW-7.raw 1 7 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 7 run 56 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 7 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013808/TW-7.raw 1 7 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 8 run 57 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 8 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013809/TW-8.raw 1 8 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 8 run 58 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 8 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013810/TW-8.raw 1 8 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 8 run 59 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 8 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013811/TW-8.raw 1 8 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 8 run 60 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 8 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013812/TW-8.raw 1 8 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 8 run 61 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 8 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013813/TW-8.raw 1 8 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 8 run 62 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 8 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013814/TW-8.raw 1 8 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 8 run 63 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 8 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013815/TW-8.raw 1 8 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 8 run 64 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 8 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013816/TW-8.raw 1 8 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 9 run 65 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 9 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013817/TW-9.raw 1 9 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 9 run 66 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 9 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013818/TW-9.raw 1 9 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 9 run 67 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 9 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013819/TW-9.raw 1 9 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 9 run 68 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 9 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013820/TW-9.raw 1 9 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 9 run 69 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 9 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013821/TW-9.raw 1 9 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 9 run 70 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 9 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013822/TW-9.raw 1 9 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 9 run 71 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 9 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013823/TW-9.raw 1 9 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 9 run 72 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 9 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013824/TW-9.raw 1 9 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 10 run 73 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 10 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013825/TW-10.raw 1 10 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 10 run 74 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 10 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013826/TW-10.raw 1 10 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 10 run 75 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 10 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013827/TW-10.raw 1 10 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 10 run 76 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 10 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013828/TW-10.raw 1 10 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 10 run 77 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 10 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013829/TW-10.raw 1 10 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 10 run 78 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 10 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013830/TW-10.raw 1 10 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 10 run 79 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 10 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013831/TW-10.raw 1 10 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 10 run 80 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 10 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013832/TW-10.raw 1 10 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 12 run 81 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 12 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013833/TW-11.raw 1 11 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 11 run 82 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 11 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013834/TW-11.raw 1 11 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 11 run 83 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 11 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013835/TW-11.raw 1 11 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 11 run 84 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 11 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013836/TW-11.raw 1 11 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 11 run 85 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 11 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013837/TW-11.raw 1 11 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 11 run 86 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 11 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013838/TW-11.raw 1 11 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 11 run 87 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 11 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013839/TW-11.raw 1 11 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 11 run 88 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 11 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013840/TW-11.raw 1 11 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 12 run 89 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 12 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013841/TW-12.raw 1 12 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 12 run 90 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 12 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013842/TW-12.raw 1 12 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 12 run 91 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 12 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013843/TW-12.raw 1 12 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 12 run 92 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 12 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013844/TW-12.raw 1 12 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 12 run 93 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 12 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013845/TW-12.raw 1 12 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 12 run 94 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 12 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013846/TW-12.raw 1 12 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 12 run 95 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 12 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013847/TW-12.raw 1 12 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 12 run 96 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 12 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013848/TW-12.raw 1 12 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 13 run 97 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 13 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013849/TW-13.raw 1 13 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 13 run 98 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 13 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013850/TW-13.raw 1 13 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 13 run 99 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 13 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013851/TW-13.raw 1 13 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 13 run 100 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 13 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013852/TW-13.raw 1 13 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 13 run 101 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 13 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013853/TW-13.raw 1 13 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 13 run 102 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 13 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013854/TW-13.raw 1 13 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 13 run 103 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 13 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013855/TW-13.raw 1 13 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 13 run 104 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 13 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013856/TW-13.raw 1 13 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 14 run 105 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 14 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013857/TW-14.raw 1 14 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 14 run 106 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 14 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013858/TW-14.raw 1 14 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 14 run 107 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 14 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013859/TW-14.raw 1 14 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 14 run 108 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 14 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013860/TW-14.raw 1 14 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 14 run 109 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 14 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013861/TW-14.raw 1 14 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 14 run 110 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 14 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013862/TW-14.raw 1 14 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 14 run 111 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 14 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013863/TW-14.raw 1 14 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 14 run 112 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 14 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013864/TW-14.raw 1 14 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 15 run 113 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 15 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013865/TW-15.raw 1 15 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 15 run 114 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 15 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013866/TW-15.raw 1 15 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 15 run 115 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 15 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013867/TW-15.raw 1 15 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 15 run 116 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 15 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013868/TW-15.raw 1 15 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 15 run 117 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 15 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013869/TW-15.raw 1 15 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 15 run 118 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 15 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013870/TW-15.raw 1 15 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 15 run 119 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 15 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013871/TW-15.raw 1 15 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 15 run 120 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 15 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013872/TW-15.raw 1 15 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 16 run 121 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 16 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013873/TW-16.raw 1 16 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 16 run 122 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 16 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013874/TW-16.raw 1 16 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 16 run 123 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 16 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013875/TW-16.raw 1 16 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 16 run 124 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 16 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013876/TW-16.raw 1 16 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 16 run 125 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 16 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013877/TW-16.raw 1 16 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 16 run 126 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 16 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013878/TW-16.raw 1 16 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 16 run 127 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 16 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013879/TW-16.raw 1 16 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 16 run 128 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 16 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013880/TW-16.raw 1 16 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 17 run 129 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 17 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013881/TW-17.raw 1 17 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 17 run 130 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 17 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013882/TW-17.raw 1 17 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 17 run 131 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 17 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013883/TW-17.raw 1 17 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 17 run 132 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 17 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013884/TW-17.raw 1 17 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 17 run 133 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 17 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013885/TW-17.raw 1 17 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 17 run 134 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 17 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013886/TW-17.raw 1 17 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 17 run 135 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 17 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013887/TW-17.raw 1 17 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 17 run 136 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 17 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013888/TW-17.raw 1 17 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 18 run 137 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 18 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013889/TW-18.raw 1 18 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 18 run 138 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 18 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013890/TW-18.raw 1 18 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 18 run 139 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 18 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013891/TW-18.raw 1 18 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 18 run 140 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 18 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013892/TW-18.raw 1 18 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 18 run 141 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 18 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013893/TW-18.raw 1 18 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 18 run 142 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 18 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013894/TW-18.raw 1 18 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 18 run 143 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 18 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013895/TW-18.raw 1 18 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 18 run 144 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 18 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013896/TW-18.raw 1 18 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 19 run 145 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 19 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013897/TW-19.raw 1 19 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 19 run 146 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 19 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013898/TW-19.raw 1 19 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 19 run 147 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 19 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013899/TW-19.raw 1 19 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 19 run 148 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 19 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013900/TW-19.raw 1 19 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 19 run 149 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 19 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013901/TW-19.raw 1 19 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 19 run 150 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 19 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013902/TW-19.raw 1 19 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 19 run 151 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 19 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013903/TW-19.raw 1 19 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 19 run 152 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 19 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013904/TW-19.raw 1 19 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 20 run 153 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 20 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013905/TW-20.raw 1 20 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N APOE3/3 Control_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 20 run 154 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 20 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013906/TW-20.raw 1 20 1 TW5-Pool5-ctrl ApoE3/3 17 129N APOE3/3 Control_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 20 run 155 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 20 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013907/TW-20.raw 1 20 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N APOE3/4 Control_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 20 run 156 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 20 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013908/TW-20.raw 1 20 1 TW7-Pool7-ctrl ApoE4/x 17 130N APOE3/4 Control_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control -Sample 20 run 157 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 20 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013909/TW-20.raw 1 20 1 TW2-Pool2-AD ApoE3/3 41/42 127C APOE3/3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 20 run 158 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 20 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013910/TW-20.raw 1 20 1 TW6-Pool6-AD ApoE3/3 17 129C APOE3/3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 20 run 159 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 20 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013911/TW-20.raw 1 20 1 TW4-Pool4-AD ApoE4/x 41/42 128C APOE3/4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus BA41/42 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease -Sample 20 run 160 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 20 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013912/TW-20.raw 1 20 1 TW8-Pool7-AD ApoE4/x 17 130C APOE3/4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex BA17 AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +source name characteristics[organism] characteristics[organism part] comment[region] characteristics[cell type] characteristics[age] characteristics[ancestry category] characteristics[sex] characteristics[disease] characteristics[biological replicate] characteristics[individual] characteristics[sample] characteristics[apoE.status] chracteristics[broadman area] assay name comment[proteomexchange accession number] comment[data file] comment[file uri] comment[batch] comment[fraction identifier] characteristics[technical replicate] characteristics[pooled sample] comment[label] comment[instrument] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[cleavage agent details] comment[fragment mass tolerance] comment[precursor mass tolerance] factor value[disease] +Sample 1 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 1 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 1 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013753/TW-1.raw 1 1 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 1 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 1 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 2 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013754/TW-1.raw 1 1 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 1 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 1 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 3 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013755/TW-1.raw 1 1 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 1 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 1 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 4 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013756/TW-1.raw 1 1 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 1 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 1 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 5 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013757/TW-1.raw 1 1 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 1 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 1 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 6 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013758/TW-1.raw 1 1 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 1 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 1 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 7 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013759/TW-1.raw 1 1 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 1 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 1 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 8 PXD013753 TW-1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013760/TW-1.raw 1 1 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 2 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 2 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 9 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013761/TW-2.raw 1 2 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 2 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 2 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 10 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013762/TW-2.raw 1 2 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 2 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 2 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 11 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013763/TW-2.raw 1 2 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 2 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 2 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 12 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013764/TW-2.raw 1 2 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 2 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 2 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 13 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013765/TW-2.raw 1 2 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 2 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 2 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 14 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013766/TW-2.raw 1 2 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 2 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 2 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 15 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013767/TW-2.raw 1 2 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 2 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 2 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 16 PXD013753 TW-2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013768/TW-2.raw 1 2 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 3 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 3 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 17 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013769/TW-3.raw 1 3 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 3 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 3 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 18 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013770/TW-3.raw 1 3 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 3 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 3 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 19 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013771/TW-3.raw 1 3 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 3 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 3 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 20 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013772/TW-3.raw 1 3 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 3 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 3 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 21 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013773/TW-3.raw 1 3 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 3 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 3 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 22 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013774/TW-3.raw 1 3 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 3 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 3 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 23 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013775/TW-3.raw 1 3 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 3 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 3 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 24 PXD013753 TW-3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013776/TW-3.raw 1 3 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 4 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 4 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 25 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013777/TW-4.raw 1 4 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 4 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 4 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 26 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013778/TW-4.raw 1 4 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 4 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 4 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 27 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013779/TW-4.raw 1 4 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 4 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 4 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 28 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013780/TW-4.raw 1 4 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 4 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 4 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 29 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013781/TW-4.raw 1 4 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 4 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 4 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 30 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013782/TW-4.raw 1 4 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 4 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 4 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 31 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013783/TW-4.raw 1 4 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 4 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 4 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 32 PXD013753 TW-4.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013784/TW-4.raw 1 4 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 5 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 5 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 33 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013785/TW-5.raw 1 5 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 5 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 5 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 34 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013786/TW-5.raw 1 5 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 5 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 5 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 35 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013787/TW-5.raw 1 5 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 5 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 5 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 36 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013788/TW-5.raw 1 5 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 5 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 5 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 37 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013789/TW-5.raw 1 5 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 5 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 5 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 38 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013790/TW-5.raw 1 5 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 5 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 5 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 39 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013791/TW-5.raw 1 5 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 5 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 5 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 40 PXD013753 TW-5.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013792/TW-5.raw 1 5 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 6 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 6 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 41 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013793/TW-6.raw 1 6 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 6 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 6 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 42 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013794/TW-6.raw 1 6 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 6 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 6 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 43 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013795/TW-6.raw 1 6 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 6 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 6 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 44 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013796/TW-6.raw 1 6 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 6 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 6 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 45 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013797/TW-6.raw 1 6 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 6 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 6 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 46 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013798/TW-6.raw 1 6 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 6 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 6 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 47 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013799/TW-6.raw 1 6 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 6 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 6 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 48 PXD013753 TW-6.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013800/TW-6.raw 1 6 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 7 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 7 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 49 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013801/TW-7.raw 1 7 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 7 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 7 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 50 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013802/TW-7.raw 1 7 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 7 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 7 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 51 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013803/TW-7.raw 1 7 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 7 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 7 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 52 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013804/TW-7.raw 1 7 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 7 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 7 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 53 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013805/TW-7.raw 1 7 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 7 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 7 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 54 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013806/TW-7.raw 1 7 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 7 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 7 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 55 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013807/TW-7.raw 1 7 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 7 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 7 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 56 PXD013753 TW-7.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013808/TW-7.raw 1 7 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 8 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 8 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 57 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013809/TW-8.raw 1 8 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 8 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 8 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 58 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013810/TW-8.raw 1 8 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 8 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 8 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 59 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013811/TW-8.raw 1 8 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 8 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 8 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 60 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013812/TW-8.raw 1 8 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 8 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 8 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 61 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013813/TW-8.raw 1 8 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 8 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 8 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 62 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013814/TW-8.raw 1 8 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 8 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 8 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 63 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013815/TW-8.raw 1 8 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 8 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 8 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 64 PXD013753 TW-8.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013816/TW-8.raw 1 8 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 9 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 9 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 65 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013817/TW-9.raw 1 9 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 9 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 9 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 66 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013818/TW-9.raw 1 9 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 9 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 9 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 67 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013819/TW-9.raw 1 9 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 9 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 9 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 68 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013820/TW-9.raw 1 9 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 9 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 9 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 69 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013821/TW-9.raw 1 9 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 9 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 9 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 70 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013822/TW-9.raw 1 9 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 9 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 9 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 71 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013823/TW-9.raw 1 9 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 9 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 9 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 72 PXD013753 TW-9.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013824/TW-9.raw 1 9 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 10 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 10 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 73 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013825/TW-10.raw 1 10 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 10 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 10 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 74 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013826/TW-10.raw 1 10 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 10 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 10 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 75 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013827/TW-10.raw 1 10 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 10 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 10 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 76 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013828/TW-10.raw 1 10 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 10 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 10 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 77 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013829/TW-10.raw 1 10 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 10 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 10 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 78 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013830/TW-10.raw 1 10 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 10 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 10 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 79 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013831/TW-10.raw 1 10 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 10 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 10 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 80 PXD013753 TW-10.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013832/TW-10.raw 1 10 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 12 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 12 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 81 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013833/TW-11.raw 1 11 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 11 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 11 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 82 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013834/TW-11.raw 1 11 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 11 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 11 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 83 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013835/TW-11.raw 1 11 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 11 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 11 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 84 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013836/TW-11.raw 1 11 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 11 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 11 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 85 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013837/TW-11.raw 1 11 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 11 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 11 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 86 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013838/TW-11.raw 1 11 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 11 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 11 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 87 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013839/TW-11.raw 1 11 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 11 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 11 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 88 PXD013753 TW-11.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013840/TW-11.raw 1 11 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 12 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 12 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 89 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013841/TW-12.raw 1 12 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 12 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 12 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 90 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013842/TW-12.raw 1 12 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 12 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 12 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 91 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013843/TW-12.raw 1 12 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 12 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 12 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 92 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013844/TW-12.raw 1 12 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 12 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 12 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 93 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013845/TW-12.raw 1 12 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 12 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 12 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 94 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013846/TW-12.raw 1 12 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 12 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 12 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 95 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013847/TW-12.raw 1 12 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 12 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 12 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 96 PXD013753 TW-12.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013848/TW-12.raw 1 12 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 13 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 13 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 97 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013849/TW-13.raw 1 13 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 13 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 13 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 98 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013850/TW-13.raw 1 13 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 13 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 13 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 99 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013851/TW-13.raw 1 13 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 13 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 13 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 100 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013852/TW-13.raw 1 13 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 13 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 13 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 101 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013853/TW-13.raw 1 13 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 13 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 13 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 102 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013854/TW-13.raw 1 13 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 13 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 13 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 103 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013855/TW-13.raw 1 13 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 13 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 13 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 104 PXD013753 TW-13.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013856/TW-13.raw 1 13 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 14 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 14 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 105 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013857/TW-14.raw 1 14 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 14 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 14 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 106 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013858/TW-14.raw 1 14 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 14 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 14 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 107 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013859/TW-14.raw 1 14 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 14 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 14 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 108 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013860/TW-14.raw 1 14 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 14 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 14 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 109 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013861/TW-14.raw 1 14 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 14 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 14 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 110 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013862/TW-14.raw 1 14 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 14 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 14 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 111 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013863/TW-14.raw 1 14 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 14 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 14 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 112 PXD013753 TW-14.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013864/TW-14.raw 1 14 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 15 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 15 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 113 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013865/TW-15.raw 1 15 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 15 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 15 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 114 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013866/TW-15.raw 1 15 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 15 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 15 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 115 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013867/TW-15.raw 1 15 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 15 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 15 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 116 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013868/TW-15.raw 1 15 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 15 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 15 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 117 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013869/TW-15.raw 1 15 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 15 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 15 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 118 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013870/TW-15.raw 1 15 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 15 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 15 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 119 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013871/TW-15.raw 1 15 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 15 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 15 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 120 PXD013753 TW-15.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013872/TW-15.raw 1 15 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 16 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 16 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 121 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013873/TW-16.raw 1 16 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 16 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 16 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 122 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013874/TW-16.raw 1 16 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 16 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 16 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 123 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013875/TW-16.raw 1 16 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 16 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 16 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 124 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013876/TW-16.raw 1 16 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 16 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 16 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 125 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013877/TW-16.raw 1 16 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 16 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 16 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 126 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013878/TW-16.raw 1 16 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 16 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 16 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 127 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013879/TW-16.raw 1 16 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 16 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 16 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 128 PXD013753 TW-16.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013880/TW-16.raw 1 16 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 17 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 17 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 129 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013881/TW-17.raw 1 17 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 17 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 17 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 130 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013882/TW-17.raw 1 17 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 17 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 17 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 131 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013883/TW-17.raw 1 17 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 17 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 17 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 132 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013884/TW-17.raw 1 17 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 17 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 17 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 133 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013885/TW-17.raw 1 17 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 17 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 17 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 134 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013886/TW-17.raw 1 17 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 17 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 17 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 135 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013887/TW-17.raw 1 17 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 17 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 17 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 136 PXD013753 TW-17.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013888/TW-17.raw 1 17 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 18 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 18 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 137 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013889/TW-18.raw 1 18 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 18 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 18 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 138 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013890/TW-18.raw 1 18 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 18 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 18 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 139 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013891/TW-18.raw 1 18 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 18 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 18 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 140 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013892/TW-18.raw 1 18 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 18 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 18 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 141 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013893/TW-18.raw 1 18 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 18 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 18 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 142 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013894/TW-18.raw 1 18 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 18 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 18 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 143 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013895/TW-18.raw 1 18 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 18 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 18 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 144 PXD013753 TW-18.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013896/TW-18.raw 1 18 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 19 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 19 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 145 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013897/TW-19.raw 1 19 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 19 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 19 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 146 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013898/TW-19.raw 1 19 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 19 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 19 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 147 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013899/TW-19.raw 1 19 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 19 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 19 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 148 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013900/TW-19.raw 1 19 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 19 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 19 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 149 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013901/TW-19.raw 1 19 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 19 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 19 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 150 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013902/TW-19.raw 1 19 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 19 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 19 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 151 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013903/TW-19.raw 1 19 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 19 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 19 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 152 PXD013753 TW-19.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013904/TW-19.raw 1 19 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 20 homo sapiens Brain superior temporal gyrus not applicable 76 not applicable not available Control 1 20 Control_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 153 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013905/TW-20.raw 1 20 1 TW1-Pool1-ctrl ApoE3/3 41/42 127N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 20 homo sapiens Brain primary visual cortex not applicable 76 not applicable not available Control 1 20 Control_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 154 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013906/TW-20.raw 1 20 1 TW5-Pool5-ctrl ApoE3/3 17 129N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 20 homo sapiens Brain superior temporal gyrus not applicable 59 not applicable not available Control 1 20 Control_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 155 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013907/TW-20.raw 1 20 1 TW3-Pool3-ctrl ApoE4/x 41/42 128N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 20 homo sapiens Brain primary visual cortex not applicable 59 not applicable not available Control 1 20 Control_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 156 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013908/TW-20.raw 1 20 1 TW7-Pool7-ctrl ApoE4/x 17 130N AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Control +Sample 20 homo sapiens Brain superior temporal gyrus not applicable 83 not applicable not available Alzheimer's Disease 1 20 Alzheimer's_Disease_APOE3/3_superior_temporal_gyrus APOE3/3 BA41/42 run 157 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013909/TW-20.raw 1 20 1 TW2-Pool2-AD ApoE3/3 41/42 127C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 20 homo sapiens Brain primary visual cortex not applicable 83 not applicable not available Alzheimer's Disease 1 20 Alzheimer's_Disease_APOE3/3_primary_visual_cortex APOE3/3 BA17 run 158 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013910/TW-20.raw 1 20 1 TW6-Pool6-AD ApoE3/3 17 129C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 20 homo sapiens Brain superior temporal gyrus not applicable 79.5 not applicable not available Alzheimer's Disease 1 20 Alzheimer's_Disease_APOE3/4_superior_temporal_gyrus APOE3/4 BA41/42 run 159 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013911/TW-20.raw 1 20 1 TW4-Pool4-AD ApoE4/x 41/42 128C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease +Sample 20 homo sapiens Brain primary visual cortex not applicable 79.5 not applicable not available Alzheimer's Disease 1 20 Alzheimer's_Disease_APOE3/4_primary_visual_cortex APOE3/4 BA17 run 160 PXD013753 TW-20.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013912/TW-20.raw 1 20 1 TW8-Pool7-AD ApoE4/x 17 130C AC=MS:1002523;NT=Q Exactive HF NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed "NT=deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Acetyl;MT=Variable;PP=Protein N-term;AC=UNIMOD:1 NT=Gln->pyro-Glu;AC=UNIMOD:28;MT=Variable AC=MS:1001251;NT=Trypsin 0.02 Da 10 ppm Alzheimer's Disease \ No newline at end of file