_pkgdown.yml

url: https://bihealth.github.io/LimsaR/
template:
  bootstrap: 5
  bootswatch: yeti
reference:
  - title: Configuration
    desc: Functions for configuring SODAR and iRODS
    contents:
      - sodar_config
      - sodar_whoami
      - sodar_irods_configuration
  - title: Project management
    desc: Functions for managing projects
    contents:
      - sodar_project_create
      - sodar_project_list
      - sodar_project_update
      - sodar_project_retrieve
      - sodar_category_list
      - sodar_user_list
      - sodar_user_role_create
      - sodar_user_role_update
  - title: Sample sheets & co.
    desc: Functions for managing sample sheets and investigations
    contents:
      - sodar_investigation_retrieve
      - sodar_sheet_import
      - sodar_sheet_export_zip
      - sodar_sheet_export_json
  - title: iRODS related functions
    desc: Functions related to iRODS and iRODS paths
    contents:
      - sodar_irods_configuration
      - sodar_create_irods
      - starts_with("sodar_file")
      - sodar_study_irods_path
      - sodar_assay_irods_path
  - title: Landing Zone management
    desc: Functions for managing the landing zones
    contents:
      - starts_with("sodar_lz")
  - title: Deletion requests
    desc: Functions for managing deletion requests
    contents:
      - starts_with("sodar_delete")
      - starts_with("sodar_request")
  - title: Tickets
    desc: Functions for managing tickets
    contents:
      - starts_with("sodar_ticket")