From c2ccecdf7b90384f9ae301c20ef27283f3456395 Mon Sep 17 00:00:00 2001
From: "Luis M. Rodriguez-R" <lmrodriguezr@gmail.com>
Date: Thu, 16 Jan 2025 16:44:26 +0100
Subject: [PATCH] Address recent change in GTDB search API

---
 lib/miga/cli/action/download/gtdb.rb | 5 +++--
 lib/miga/version.rb                  | 4 ++--
 2 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/lib/miga/cli/action/download/gtdb.rb b/lib/miga/cli/action/download/gtdb.rb
index 10ed570..8d29aa7 100644
--- a/lib/miga/cli/action/download/gtdb.rb
+++ b/lib/miga/cli/action/download/gtdb.rb
@@ -23,8 +23,9 @@ def cli_name_modifiers(opt)
 
   def sanitize_cli
     cli.ensure_par(taxon: '-T')
-    unless cli[:taxon] =~ /^[a-z]__\S+$/
-      raise 'Taxon (-T) must be in GTDB format: s__Macondimonas_diazotrophica'
+    cli[:taxon].gsub!(' ', '%20')
+    unless cli[:taxon] =~ /^[a-z]__[\S ]+$/
+      raise 'Taxon (-T) must be in GTDB format: "s__Macondimonas diazotrophica"'
     end
     cli[:save_every] = 1 if cli[:dry]
   end
diff --git a/lib/miga/version.rb b/lib/miga/version.rb
index 483dc77..09bd0bf 100644
--- a/lib/miga/version.rb
+++ b/lib/miga/version.rb
@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.3, 21, 4].freeze
+  VERSION = [1.3, 21, 5].freeze
 
   ##
   # Nickname for the current major.minor version.
@@ -20,7 +20,7 @@ module MiGA
 
   ##
   # Date of the current gem relese.
-  VERSION_DATE = Date.new(2024, 12, 23)
+  VERSION_DATE = Date.new(2025, 1, 16)
 
   ##
   # References of MiGA