diff --git a/recipes/cancerit-allelecount/build_failure.linux-aarch64.yaml b/recipes/cancerit-allelecount/build_failure.linux-aarch64.yaml index 426d4a87bb441..0ed8c53bdd3e9 100644 --- a/recipes/cancerit-allelecount/build_failure.linux-aarch64.yaml +++ b/recipes/cancerit-allelecount/build_failure.linux-aarch64.yaml @@ -36,17 +36,17 @@ log: |- host_alias=aarch64-conda-linux-gnu -BUILD=aarch64-conda_cos7-linux-gnu -CONDA_BUILD_SYSROOT= - export LIBRARY_PATH=/opt/conda/conda-bld/cancerit-allelecount_1735743546697/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib - LIBRARY_PATH=/opt/conda/conda-bld/cancerit-allelecount_1735743546697/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib - export INCPATH=/opt/conda/conda-bld/cancerit-allelecount_1735743546697/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/include - INCPATH=/opt/conda/conda-bld/cancerit-allelecount_1735743546697/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/include - cd /opt/conda/conda-bld/cancerit-allelecount_1735743546697/work/c + export LIBRARY_PATH=/opt/conda/conda-bld/cancerit-allelecount_1735771940856/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib + LIBRARY_PATH=/opt/conda/conda-bld/cancerit-allelecount_1735771940856/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib + export INCPATH=/opt/conda/conda-bld/cancerit-allelecount_1735771940856/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/include + INCPATH=/opt/conda/conda-bld/cancerit-allelecount_1735771940856/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/include + cd /opt/conda/conda-bld/cancerit-allelecount_1735771940856/work/c mkdir bin sed -i 's/CC = gcc /compiler = ${CC} /g' Makefile sed -i 's/$(CC) /$(compiler) /g' Makefile sed -i 's#HTSLOC?=$(HTSLIB)#HTSLOC=${PREFIX}/lib#g' Makefile sed -i 's#prefix=?/usr/local#prefix=${PREFIX}#g' Makefile - make -j 4 'OPTINC=-I/opt/conda/conda-bld/cancerit-allelecount_1735743546697/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/include -L/opt/conda/conda-bld/cancerit-allelecount_1735743546697/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib' + make -j 4 'OPTINC=-I/opt/conda/conda-bld/cancerit-allelecount_1735771940856/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/include -L/opt/conda/conda-bld/cancerit-allelecount_1735771940856/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib' rm -f ./src/*.o *~ ./bin/alleleCounter ./bin/* ./tests/tests_log ./tests/bam_access_tests ./src/*.gcda ./src/*.gcov ./src/*.gcno *.gcda *.gcov *.gcno ./tests/*.gcda ./tests/*.gcov ./tests/*.gcno mkdir -p ./bin mkdir -p ./htslib_tmp @@ -67,7 +67,7 @@ log: |- tests/bam_access_tests.c:45:13: warning: variable 'res' set but not used [-Wunused-but-set-variable] 45 | int res = bam_access_get_position_base_counts(chr,pos,stats,0,NULL); | ^~~ - /opt/conda/conda-bld/cancerit-allelecount_1735743546697/_build_env/bin/../lib/gcc/aarch64-conda-linux-gnu/13.3.0/../../../../aarch64-conda-linux-gnu/bin/ld: cannot find ./src/bam_access.o: No such file or directory + /opt/conda/conda-bld/cancerit-allelecount_1735771940856/_build_env/bin/../lib/gcc/aarch64-conda-linux-gnu/13.3.0/../../../../aarch64-conda-linux-gnu/bin/ld: cannot find ./src/bam_access.o: No such file or directory collect2: error: ld returned 1 exit status make: *** [: tests/bam_access_tests] Error 1 make: *** Waiting for unfinished jobs.... @@ -85,7 +85,7 @@ log: |- return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs) File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 380, in _func_defaulting_env_to_os_environ raise subprocess.CalledProcessError(proc.returncode, _args) - subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/cancerit-allelecount_1735743546697/work/conda_build.sh']' returned non-zero exit status 2. + subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/cancerit-allelecount_1735771940856/work/conda_build.sh']' returned non-zero exit status 2. The above exception was the direct cause of the following exception: @@ -100,5 +100,5 @@ log: |- packages_from_this = build( File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2566, in build raise BuildScriptException(str(exc), caused_by=exc) from exc - conda_build.exceptions.BuildScriptException: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/cancerit-allelecount_1735743546697/work/conda_build.sh']' returned non-zero exit status 2. + conda_build.exceptions.BuildScriptException: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/cancerit-allelecount_1735771940856/work/conda_build.sh']' returned non-zero exit status 2. # Last 100 lines of the build log.