From be26e33f4312e40ad6d31d02e6d6a118099ac20f Mon Sep 17 00:00:00 2001
From: slobentanzer <sebastian.lobentanzer@gmail.com>
Date: Thu, 30 Jan 2025 20:27:40 +0100
Subject: [PATCH] switch ci to pytest-cov xml generation

---
 .github/workflows/ci.yaml  | 6 +++---
 docs/coverage/coverage.svg | 6 +++---
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
index 4776243a..6a5d8d10 100644
--- a/.github/workflows/ci.yaml
+++ b/.github/workflows/ci.yaml
@@ -29,14 +29,14 @@ jobs:
 
       - name: Run tests and generate coverage report
         run: |
-          poetry run coverage run -m pytest test --ignore=./volumes
+          poetry run pytest --cov=biochatter --cov-report=xml test --ignore=./volumes
           poetry run coverage report
-          poetry run coverage xml
         shell: bash
 
       - name: Generate coverage badge
         if: (github.event_name == 'push' && github.ref == 'refs/heads/main') || (github.event_name == 'pull_request' && github.event.action == 'closed' && github.base_ref == 'refs/heads/main' && github.event.pull_request.merged == true)
-        run: poetry run coverage-badge -f -o docs/coverage/coverage.svg
+        run: |
+          poetry run coverage-badge -f -o docs/coverage/coverage.svg
         shell: bash
 
       - name: Commit changes
diff --git a/docs/coverage/coverage.svg b/docs/coverage/coverage.svg
index 90299371..1618ede7 100644
--- a/docs/coverage/coverage.svg
+++ b/docs/coverage/coverage.svg
@@ -9,13 +9,13 @@
     </mask>
     <g mask="url(#a)">
         <path fill="#555" d="M0 0h63v20H0z"/>
-        <path fill="#a4a61d" d="M63 0h36v20H63z"/>
+        <path fill="#dfb317" d="M63 0h36v20H63z"/>
         <path fill="url(#b)" d="M0 0h99v20H0z"/>
     </g>
     <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
         <text x="31.5" y="15" fill="#010101" fill-opacity=".3">coverage</text>
         <text x="31.5" y="14">coverage</text>
-        <text x="80" y="15" fill="#010101" fill-opacity=".3">76%</text>
-        <text x="80" y="14">76%</text>
+        <text x="80" y="15" fill="#010101" fill-opacity=".3">74%</text>
+        <text x="80" y="14">74%</text>
     </g>
 </svg>