@bioimageiobot, please upload resourceful-otter

[danifranco]

Temporary Public Download URL

https://drive.google.com/uc?id=1h7gSubvlC0bqu5KTb8ZwKmXmidfD9uks

Terms of Service

• I confirm that I have read and agree to bioimage.io's Terms of Service

[github-actions]

Started workflow run to upload 'https://drive.google.com/uc?id=1h7gSubvlC0bqu5KTb8ZwKmXmidfD9uks' to the bioimage.io collection.

[github-actions]

Successfully staged new draft 'resourceful-otter' from https://drive.google.com/uc?id=1h7gSubvlC0bqu5KTb8ZwKmXmidfD9uks ! 🚀

Status and test results of your upload can be found here.

[github-actions]

bioimageio format validation

❌	bioimageio format validation failed
source	https://uk1s3.embassy.ebi.ac.uk/public-datasets/bioimage.io/resourceful-otter/draft/files/rdf.yaml
format version	model 0.5.3
bioimageio.spec	0.5.3.5

❓	location	detail
✔️	.	initialized ModelDescr to describe model 0.5.3
✔️	.	bioimageio.spec format validation model 0.5.3
🔍	context.perform_io_checks	True
🔍	context.root	https://uk1s3.embassy.ebi.ac.uk/public-datasets/bioimage.io/resourceful-otter/draft/files
🔍	context.known_files.test-input.npy	d427ecae24b8e6a1c63a26049da5d331f237d88802bdb9c833abc718e0c9107c
🔍	context.known_files.test-output.npy	b7248a7ba69c87c4e3f39f79994c352f969fab97cf3223d0bf5ed90944e07b7d
🔍	context.known_files.attention_unet.py	e8df77bd57ba7c8ee80ecafcfd54ba8d9d038d77f220274dffb98f07479294c6
🔍	context.known_files.environment.yaml	d1959a76b2e7d5396e2033fb076a9839cd51b17295a768f1aef1c7327507bfb6
🔍	context.known_files.checkpoint.pth	60b71403eee6dab5c222fedffe4149ffb18ef7f8bfa3d23aa9a91ac29b54ea39
🔍	context.warning_level	error
⚠	documentation	No '# Validation' (sub)section found in documentation.md.
✔️	.	initialized ModelDescr to describe model 0.5.3
✔️	.	bioimageio.spec format validation model 0.5.3
🔍	context.perform_io_checks	True
🔍	context.root	https://uk1s3.embassy.ebi.ac.uk/public-datasets/bioimage.io/resourceful-otter/draft/files
🔍	context.known_files.test-input.npy	d427ecae24b8e6a1c63a26049da5d331f237d88802bdb9c833abc718e0c9107c
🔍	context.known_files.test-output.npy	b7248a7ba69c87c4e3f39f79994c352f969fab97cf3223d0bf5ed90944e07b7d
🔍	context.known_files.attention_unet.py	e8df77bd57ba7c8ee80ecafcfd54ba8d9d038d77f220274dffb98f07479294c6
🔍	context.known_files.environment.yaml	d1959a76b2e7d5396e2033fb076a9839cd51b17295a768f1aef1c7327507bfb6
🔍	context.known_files.checkpoint.pth	60b71403eee6dab5c222fedffe4149ffb18ef7f8bfa3d23aa9a91ac29b54ea39
🔍	context.warning_level	error
⚠	documentation	No '# Validation' (sub)section found in documentation.md.
✔️	.	Check that uploader is specified
❌	.	Check version field
✔️	.	Check id_emoji

[github-actions]

bioimageio.core.test_description

❌	bioimageio.core.test_description failed
source	https://uk1s3.embassy.ebi.ac.uk/public-datasets/bioimage.io/resourceful-otter/draft/files/rdf.yaml
format version	model 0.5.3
bioimageio.core	0.7.0
bioimageio.spec	0.5.3.5

❓	location	detail
✔️	.	initialized ModelDescr to describe model 0.5.3
✔️	.	bioimageio.spec format validation model 0.5.3
🔍	context.perform_io_checks	True
🔍	context.root	https://uk1s3.embassy.ebi.ac.uk/public-datasets/bioimage.io/resourceful-otter/draft/files
🔍	context.known_files.test-input.npy	d427ecae24b8e6a1c63a26049da5d331f237d88802bdb9c833abc718e0c9107c
🔍	context.known_files.test-output.npy	b7248a7ba69c87c4e3f39f79994c352f969fab97cf3223d0bf5ed90944e07b7d
🔍	context.known_files.attention_unet.py	e8df77bd57ba7c8ee80ecafcfd54ba8d9d038d77f220274dffb98f07479294c6
🔍	context.known_files.environment.yaml	d1959a76b2e7d5396e2033fb076a9839cd51b17295a768f1aef1c7327507bfb6
🔍	context.known_files.checkpoint.pth	60b71403eee6dab5c222fedffe4149ffb18ef7f8bfa3d23aa9a91ac29b54ea39
🔍	context.warning_level	error
⚠	documentation	No '# Validation' (sub)section found in documentation.md.
❌	.	install test environment
❌	.	Failed to install conda environment: channels: [conda-forge, pytorch, nodefaults] dependencies: - pip - python>=3.10 - pytorch >=2.4.0,<3 - pip: [biapy==3.5.10, pytorch-msssim==1.0.0, timm==1.0.8, torchaudio==2.4.0, 'torchmetrics[image]==1.4.*', torchvision==0.19.0, git+https://github.com/bioimage-io/collection.git@main] name: pytorch_state_dict