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germplasm.obo
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format-version: 1.2
date: 10:09:2009 14:26
auto-generated-by: OBO-Edit 2.0
default-namespace: GCP germplasm ontology
namespace-id-rule: * CO_010:$sequence(7,0,9999999)$
[Term]
id: CO_010:0000000
name: GCP germplasm ontology
comment: release date: July 31, 2007\nversion: 1.0 Adapted from Descriptors for Banana (Musa spp.) (1996) and Descriptors for Mango by Bioversity\ncoverage: General germplasm descriptors\ncreator: Jeffrey Detras, Tom Hazekamp and Richard Bruskiewich\npublisher: Bioversity International and IRRI for the Generation Challenge Program
xref: GCPDomainModel:CO_000:0000165
[Term]
id: CO_010:0000003
name: collected germplasm descriptor
is_a: CO_010:0000020 ! origin descriptor
relationship: CO_010:0000002 CO_010:0000254 ! collected germplasm
[Term]
id: CO_010:0000004
name: elevation of collecting site
comment: Elevation of collecting site expressed in meters above sea level. Negative values allowed. Format:[m asl].
synonym: "ELEVATION" EXACT []
xref: multicrop passport ontology:CO_020:0000017
is_a: CO_010:0000226 ! collecting site descriptor
[Term]
id: CO_010:0000005
name: collecting or acquisition source
comment: The coding scheme proposed can be used at 2 different levels of detail: Either by using the global codes such as 1, 2, 3, 4 or by using the more detailed coding such as 1.1, 1.2, 1.3 etc.
synonym: "COLLSRC" EXACT []
xref: multicrop passport ontology:CO_020:0000022
is_a: CO_010:0000226 ! collecting site descriptor
[Term]
id: CO_010:0000006
name: photograph
comment: Was a photograph(s) taken of the accession or habitat at the time of collecting? If so,provide an identification number(s) in descriptor collector's notes.
is_a: CO_010:0000256 ! collecting event descriptor
[Term]
id: CO_010:0000007
name: primary administrative subdivision
comment: Name of the primary administrative subdivision of the country in which the sample was collected.
synonym: "province" RELATED []
synonym: "state" RELATED []
xref: GCPDomainModel:CO_000:0000142
is_a: CO_010:0000226 ! collecting site descriptor
[Term]
id: CO_010:0000008
name: latitude of collecting site
comment: Degrees and minutes followed by N (North) or S (South) (e.g. 1030S). Missing data (minutes) should be indicated with hyphen (e.g. 10 S).
synonym: "LATITUDE" EXACT []
xref: multicrop passport ontology:CO_020:0000015
is_a: CO_010:0000226 ! collecting site descriptor
[Term]
id: CO_010:0000009
name: prevailing stress
comment: Information on associated biotic and abiotic stresses and the accessions reaction. Indicate if disease indexing was done at the time of collecting in descriptor collector's notes.
is_a: CO_010:0000226 ! collecting site descriptor
[Term]
id: CO_010:0000010
name: country of origin
comment: Name of the country in which the sample was originally collected or derived. Use the ISO 3166 extended codes, (i.e. current and old 3 letter ISO 3166 country codes).
synonym: "country of collecting" RELATED []
synonym: "ORIGCTY" EXACT []
xref: GCPDomainModel:CO_000:0000173
xref: multicrop passport ontology:CO_020:0000013
is_a: CO_010:0000226 ! collecting site descriptor
[Term]
id: CO_010:0000011
name: ethnic group
comment: Name of the tribe of the farmer donating the sample or of the people living in the area of collecting.
is_a: CO_010:0000227 ! ethnobotany descriptor
[Term]
id: CO_010:0000012
name: associated flora
comment: Other dominant crop/plant species, found in and around the collecting site.
is_a: CO_010:0000226 ! collecting site descriptor
[Term]
id: CO_010:0000013
name: post-movement activities data
comment: Use descriptors destination of the accession and treatment of sample during mission in pre- and post-movement activities data.
is_a: CO_010:0000003 ! collected germplasm descriptor
[Term]
id: CO_010:0000014
name: collecting number
comment: Original number assigned by the collector(s) of the sample, normally composed of the name or initials of the collector(s) followed by a number. This item is essential for identifying duplicates held in different collections. It should be unique and always accompany subsamples wherever they are sent.
synonym: "COLLNUMB" EXACT []
xref: multicrop passport ontology:CO_020:0000003
is_a: CO_010:0000021 ! accession identifier descriptor
[Term]
id: CO_010:0000015
name: plant population density
is_a: CO_010:0000256 ! collecting event descriptor
[Term]
id: CO_010:0000016
name: plant use
is_a: CO_010:0000227 ! ethnobotany descriptor
[Term]
id: CO_010:0000017
name: cultural method
is_a: CO_010:0000227 ! ethnobotany descriptor
is_a: CO_010:0000345 ! multiplication descriptor
is_a: CO_010:0000375 ! regeneration descriptor
[Term]
id: CO_010:0000018
name: status of plantation
is_a: CO_010:0000017 ! cultural method
[Term]
id: CO_010:0000019
name: cropping system
is_a: CO_010:0000017 ! cultural method
[Term]
id: CO_010:0000020
name: origin descriptor
is_a: CO_010:0000037 ! accession descriptor
[Term]
id: CO_010:0000021
name: accession identifier descriptor
is_a: CO_010:0000037 ! accession descriptor
[Term]
id: CO_010:0000022
name: biological status of accession
comment: The coding scheme proposed can be used at 3 different levels of detail: either by using the general codes (in boldface) such as 100, 200, 300, 400 or by using the more specific codes such as 110, 120 etc.
synonym: "SAMPSTAT" EXACT []
synonym: "status of sample" RELATED []
xref: GCPDomainModel:CO_000:0000138
xref: multicrop passport ontology:CO_020:0000020
is_a: CO_010:0000037 ! accession descriptor
[Term]
id: CO_010:0000023
name: collecting source environment
comment: Use collecting and/or characterization/evaluation site environment descriptors.
is_a: CO_010:0000226 ! collecting site descriptor
[Term]
id: CO_010:0000024
name: collecting institute code
comment: Code of the Institute collecting the sample. If the holding institute has collected the material, the collecting institute code (COLLCODE) should be the same as the holding institute code (INSTCODE). Follows INSTCODE standard.
synonym: "COLLCODE" EXACT []
xref: multicrop passport ontology:CO_020:0000004
is_a: CO_010:0000080 ! collecting mission descriptor
is_a: CO_010:0000154 ! institute code
[Term]
id: CO_010:0000025
name: local name
comment: Name given by farmer to crop and cultivar/landrace/weed. State language and dialect if the ethnic group is not provided.
synonym: "vernacular name" RELATED []
is_a: CO_010:0000237 ! local germplasm name descriptor
[Term]
id: CO_010:0000026
name: longitude of collecting site
comment: Degrees and minutes followed by E (East) or W (West) (e.g. 07625W). Missing data (minutes) should be indicated with hyphen (e.g. 076 W).
synonym: "LONGITUDE" EXACT []
xref: multicrop passport ontology:CO_020:0000016
is_a: CO_010:0000226 ! collecting site descriptor
[Term]
id: CO_010:0000027
name: herbarium specimen
comment: Was a herbarium specimen collected? If so, provide an identification number in descriptor.
is_a: CO_010:0000256 ! collecting event descriptor
[Term]
id: CO_010:0000028
name: location of collecting site
comment: Location information below the country level that describes where the accession was collected starting with the most detailed information. Might include the distance in kilometers and direction from the nearest town, village or map grid reference point, (e.g. CURITIBA 7S, PARANA means 7 km south of Curitiba in the state of Parana).
synonym: "COLLSITE" EXACT []
xref: multicrop passport ontology:CO_020:0000014
is_a: CO_010:0000226 ! collecting site descriptor
[Term]
id: CO_010:0000029
name: cultivar
is_a: CO_010:0000224 ! taxon rank
[Term]
id: CO_010:0000030
name: collecting date of sample
comment: Collecting date of the sample where YYYY is the year, MM is the month and DD is the day. Missing data (MM or DD) should be indicated with hyphens. Leading zeros are required. Format: [DDMMYYYY].
synonym: "COLLDATE" EXACT []
xref: multicrop passport ontology:CO_020:0000018
is_a: CO_010:0000256 ! collecting event descriptor
[Term]
id: CO_010:0000031
name: collector's note
comment: Additional information recorded by the collector or any specific information on any state in any of the above descriptors.
is_a: CO_010:0000256 ! collecting event descriptor
[Term]
id: CO_010:0000032
name: secondary administrative subdivision
comment: Name of the secondary administrative subdivision (within a Province/State) of the country in which the sample was collected.
synonym: "county" RELATED []
synonym: "department" RELATED []
xref: GCPDomainModel:CO_000:0000142
is_a: CO_010:0000226 ! collecting site descriptor
[Term]
id: CO_010:0000033
name: site number
comment: Number assigned to the physical site by the collector.
is_a: CO_010:0000226 ! collecting site descriptor
[Term]
id: CO_010:0000034
name: number of plants sampled
is_a: CO_010:0000256 ! collecting event descriptor
[Term]
id: CO_010:0000035
name: parts of the plant used
is_a: CO_010:0000227 ! ethnobotany descriptor
[Term]
id: CO_010:0000036
name: type of sample collected
comment: Form of sample collected. If different types of material were collected from the same source, each sample type should be designated with a unique collecting number and a corresponding unique accession number.
is_a: CO_010:0000256 ! collecting event descriptor
[Term]
id: CO_010:0000037
name: accession descriptor
is_a: CO_010:0000374 ! passport descriptor
relationship: CO_010:0000002 CO_010:0000044 ! accession
[Term]
id: CO_010:0000038
name: full scientific name
comment: The full name of the lowest taxon to which the organism can be identified.The full name of the lowest taxon to which the organism can be identified.
is_a: CO_010:0000223 ! taxonomy descriptor
[Term]
id: CO_010:0000039
name: species
comment: Specific epithet portion of the scientific name in lowercase letters plus authority1. Following abbreviation is allowed: sp.
synonym: "SPECIES" EXACT []
xref: GCPDomainModel:CO_000:0000205
xref: multicrop passport ontology:CO_020:0000006
is_a: CO_010:0000224 ! taxon rank
[Term]
id: CO_010:0000040
name: subtaxa
comment: Subtaxa can be used to store any additional taxonomic identifier plus authority1. Following abbreviations are allowed: ssp. (for subspecies); var. (for variety); convar. (for convariety); f. (for form).
synonym: "Subspecies" RELATED []
synonym: "SUBTAXA" EXACT []
xref: GCPDomainModel:CO_000:0000151
xref: multicrop passport ontology:CO_020:0000008
is_a: CO_010:0000224 ! taxon rank
[Term]
id: CO_010:0000041
name: reference form
comment: Either a registered or other formal designation given to the accession (e.g. Pisang Mas is the reference name to be used for cultivars Figue sucre Amas, Kluai Khai, etc.).
synonym: "cultivar" RELATED []
is_a: CO_010:0000223 ! taxonomy descriptor
[Term]
id: CO_010:0000042
name: genus
comment: Genus name for taxon. Initial Uppercase letter required.
synonym: "GENUS" EXACT []
xref: GCPDomainModel:CO_000:0000154
xref: multicrop passport ontology:CO_020:0000005
is_a: CO_010:0000224 ! taxon rank
[Term]
id: CO_010:0000043
name: section
is_a: CO_010:0000224 ! taxon rank
[Term]
id: CO_010:0000044
name: accession
xref: GCPDomainModel:CO_000:0000115
is_a: CO_010:0000151 ! entity
[Term]
id: CO_010:0000045
name: accession name
comment: Either a registered or other formal designation given to the accession. First letter uppercase. Multiple names separated with semicolon.
synonym: "ACCENAME" EXACT []
xref: multicrop passport ontology:CO_020:0000011
is_a: CO_010:0000021 ! accession identifier descriptor
[Term]
id: CO_010:0000046
name: synonym
comment: Include here any previous identification other than the current name and the country. Collecting number or newly assigned station name are frequently used as identifiers.
is_a: CO_010:0000021 ! accession identifier descriptor
[Term]
id: CO_010:0000047
name: translation
comment: Provide translation of the local accession name into English.
synonym: "transliteration" RELATED []
is_a: CO_010:0000237 ! local germplasm name descriptor
is_a: CO_010:0000249 ! crop name descriptor
[Term]
id: CO_010:0000048
name: local language
comment: Language in which the accession name is given.
is_a: CO_010:0000237 ! local germplasm name descriptor
is_a: CO_010:0000249 ! crop name descriptor
[Term]
id: CO_010:0000049
name: accession size
comment: Number of seeds, seedlings, budsticks, in vitro plants, etc. of an accession in the genebank.
is_a: CO_010:0000037 ! accession descriptor
[Term]
id: CO_010:0000050
name: previous location
comment: Register other known previous locations of the accession, from the most recent to the oldest known location.
is_a: CO_010:0000003 ! collected germplasm descriptor
[Term]
id: CO_010:0000051
name: remarks
comment: The remarks field is used to add notes or to elaborate on descriptors with value 99 or 999 (=Other). Prefix remarks with the field name they refer to and a colon (e.g. COLLSRC:riverside). Separate remarks referring to different fields are separated by semicolons without space.
synonym: "notes" RELATED []
synonym: "REMARKS" EXACT []
xref: multicrop passport ontology:CO_020:0000028
is_a: CO_010:0000037 ! accession descriptor
is_a: CO_010:0000124 ! management descriptor
[Term]
id: CO_010:0000052
name: pedigree information
comment: Parentage or nomenclature, and designations assigned to breeders material, in the case of an artificial hybrid only.
is_a: CO_010:0000152 ! ancestral data
[Term]
id: CO_010:0000053
name: female parent
is_a: CO_010:0000220 ! parentage of pedigree
[Term]
id: CO_010:0000054
name: male parent
is_a: CO_010:0000220 ! parentage of pedigree
[Term]
id: CO_010:0000055
name: pedigree release year
is_a: CO_010:0000052 ! pedigree information
[Term]
id: CO_010:0000056
name: donor name
comment: Name of institution or individual responsible for donating the germplasm.
is_a: CO_010:0000225 ! donated germplasm descriptor
[Term]
id: CO_010:0000057
name: acquisition date
comment: Date on which the accession entered the collection where YYYY is the year, MM is the month and DD is the day. Missing data (MM or DD) should be indicated with hyphens. Leading zeros are required. Format: [DDMMYYYY].
synonym: "ACQDATE" EXACT []
xref: multicrop passport ontology:CO_020:0000012
is_a: CO_010:0000037 ! accession descriptor
[Term]
id: CO_010:0000058
name: accession number
comment: This number serves as a unique identifier for accessions and is assigned when an accession is entered into the collection. Once assigned this number should never be reassigned to another accession in the collection. Even if an accession is lost, its assigned number should never be reused. Letters should be used before the number to identify the genebank or national system (e.g. IDG indicates an accession that comes from the genebank at Bari, Italy; CGN indicates an accession from the genebank at Wageningen, The Netherlands; PI indicates an accession within the USA system).
synonym: "ACCENUMB" EXACT []
xref: multicrop passport ontology:CO_020:0000002
is_a: CO_010:0000021 ! accession identifier descriptor
is_a: CO_010:0000124 ! management descriptor
is_a: CO_010:0000345 ! multiplication descriptor
is_a: CO_010:0000375 ! regeneration descriptor
[Term]
id: CO_010:0000059
name: donor accession number
comment: Number assigned to an accession by the donor. Follows ACCENUMB standard.
synonym: "DONORNUMB" EXACT []
xref: multicrop passport ontology:CO_020:0000024
is_a: CO_010:0000058 ! accession number
is_a: CO_010:0000225 ! donated germplasm descriptor
[Term]
id: CO_010:0000060
name: type of material received
is_a: CO_010:0000037 ! accession descriptor
[Term]
id: CO_010:0000061
name: other identification number
comment: Other identification (numbers) associated with the accession (OTHERNUMB)\nAny other identification (numbers) known to exist in other collections for this accession. Use the following system: INSTCODE:ACCENUMB;INSTCODE:ACCENUMB; INSTCODE and ACCENUMB follow the standard described above and are separated by a colon. Pairs of INSTCODE and ACCENUMB are separated by a semicolon without space. When the institute is not known, the number should be preceded by a colon.
synonym: "other number(s) associated with the accession" RELATED []
synonym: "OTHERNUMB" EXACT []
xref: multicrop passport ontology:CO_020:0000025
is_a: CO_010:0000021 ! accession identifier descriptor
[Term]
id: CO_010:0000062
name: cultivar group
is_a: CO_010:0000224 ! taxon rank
[Term]
id: CO_010:0000063
name: taxonomic reference
is_a: CO_010:0000223 ! taxonomy descriptor
[Term]
id: CO_010:0000064
name: PassportDescriptorCode
is_a: CO_010:0000234 ! GermplasmDescriptorCode
[Term]
id: CO_010:0000065
name: CollectingOrAcquisitionSourceCode
xref: GCPDomainModel:CO_000:0000136
xref: multicrop passport ontology:CO_020:0000076
is_a: CO_010:0000064 ! PassportDescriptorCode
relationship: CO_010:0000001 CO_010:0000005 ! collecting or acquisition source
[Term]
id: CO_010:0000066
name: 10 wild habitat
xref: multicrop passport ontology:CO_020:0000044
is_a: CO_010:0000065 ! CollectingOrAcquisitionSourceCode
[Term]
id: CO_010:0000067
name: 20 farm or cultivated habitat
xref: multicrop passport ontology:CO_020:0000050
is_a: CO_010:0000065 ! CollectingOrAcquisitionSourceCode
[Term]
id: CO_010:0000068
name: 30 market or shop
xref: multicrop passport ontology:CO_020:0000059
is_a: CO_010:0000065 ! CollectingOrAcquisitionSourceCode
[Term]
id: CO_010:0000069
name: 40 research organization
comment: Source can also be an institute, experimental station or genebank.
xref: multicrop passport ontology:CO_020:0000060
is_a: CO_010:0000065 ! CollectingOrAcquisitionSourceCode
[Term]
id: CO_010:0000070
name: other export procedure
comment: Specify in descriptor remarks.
xref: multicrop passport ontology:CO_020:0000043
is_a: CO_010:0000130 ! export procedure
[Term]
id: CO_010:0000071
name: PlantPopulationDensityCode
is_a: CO_010:0000064 ! PassportDescriptorCode
relationship: CO_010:0000001 CO_010:0000015 ! plant population density
[Term]
id: CO_010:0000072
name: 3 low plant population density
is_a: CO_010:0000071 ! PlantPopulationDensityCode
[Term]
id: CO_010:0000073
name: 5 intermediate plant population density
is_a: CO_010:0000071 ! PlantPopulationDensityCode
[Term]
id: CO_010:0000074
name: 7 high plant population density
is_a: CO_010:0000071 ! PlantPopulationDensityCode
[Term]
id: CO_010:0000075
name: PlantUseCode
is_a: CO_010:0000064 ! PassportDescriptorCode
relationship: CO_010:0000001 CO_010:0000016 ! plant use
[Term]
id: CO_010:0000076
name: 1 textile
is_a: CO_010:0000075 ! PlantUseCode
[Term]
id: CO_010:0000077
name: 2 building
is_a: CO_010:0000075 ! PlantUseCode
[Term]
id: CO_010:0000078
name: 3 food
is_a: CO_010:0000075 ! PlantUseCode
[Term]
id: CO_010:0000079
name: 4 ornamental
is_a: CO_010:0000075 ! PlantUseCode
[Term]
id: CO_010:0000080
name: collecting mission descriptor
is_a: CO_010:0000003 ! collected germplasm descriptor
[Term]
id: CO_010:0000081
name: StatusOfPlantationCode
is_a: CO_010:0000064 ! PassportDescriptorCode
relationship: CO_010:0000001 CO_010:0000018 ! status of plantation
[Term]
id: CO_010:0000082
name: 1 backyard
is_a: CO_010:0000081 ! StatusOfPlantationCode
[Term]
id: CO_010:0000083
name: 2 smallholding
comment: A smallholding is less than 5 hectares.
is_a: CO_010:0000081 ! StatusOfPlantationCode
[Term]
id: CO_010:0000084
name: 3 midsize holding
comment: A midsize holding is 5 to 10 hectares.
is_a: CO_010:0000081 ! StatusOfPlantationCode
[Term]
id: CO_010:0000085
name: 4 plantation
comment: A plantation is greater than 10 hectares.
is_a: CO_010:0000081 ! StatusOfPlantationCode
[Term]
id: CO_010:0000086
name: collecting mission code
is_a: CO_010:0000080 ! collecting mission descriptor
[Term]
id: CO_010:0000087
name: collecting mission title
is_a: CO_010:0000080 ! collecting mission descriptor
[Term]
id: CO_010:0000088
name: collecting mission start date
is_a: CO_010:0000080 ! collecting mission descriptor
[Term]
id: CO_010:0000089
name: BiologicalStatusOfAccessionCode
xref: GCPDomainModel:CO_000:0000071
xref: multicrop passport ontology:CO_020:0000075
is_a: CO_010:0000064 ! PassportDescriptorCode
relationship: CO_010:0000001 CO_010:0000022 ! biological status of accession
[Term]
id: CO_010:0000090
name: 100 wild
xref: multicrop passport ontology:CO_020:0000029
is_a: CO_010:0000089 ! BiologicalStatusOfAccessionCode
[Term]
id: CO_010:0000091
name: 200 weedy
xref: multicrop passport ontology:CO_020:0000032
is_a: CO_010:0000089 ! BiologicalStatusOfAccessionCode
[Term]
id: CO_010:0000092
name: 300 traditional cultivar
synonym: "landrace" RELATED []
synonym: "primitive cultivar" RELATED []
xref: multicrop passport ontology:CO_020:0000033
is_a: CO_010:0000089 ! BiologicalStatusOfAccessionCode
[Term]
id: CO_010:0000093
name: 410 breeder's line
xref: multicrop passport ontology:CO_020:0000035
is_a: CO_010:0000159 ! 400 breedingmaterial
[Term]
id: CO_010:0000094
name: 500 improved cultivar
synonym: "advanced cultivar" RELATED []
xref: multicrop passport ontology:CO_020:0000042
is_a: CO_010:0000089 ! BiologicalStatusOfAccessionCode
[Term]
id: CO_010:0000095
name: collecting mission end date
is_a: CO_010:0000080 ! collecting mission descriptor
[Term]
id: CO_010:0000096
name: collector descriptor
is_a: CO_010:0000256 ! collecting event descriptor
[Term]
id: CO_010:0000097
name: collector name
is_a: CO_010:0000096 ! collector descriptor
[Term]
id: CO_010:0000098
name: collector institute
is_a: CO_010:0000096 ! collector descriptor
[Term]
id: CO_010:0000099
name: in vitro regeneration process
is_a: CO_010:0000307 ! in vitro conservation descriptor
[Term]
id: CO_010:0000100
name: location after the last in vitro subculture
is_a: CO_010:0000307 ! in vitro conservation descriptor
[Term]
id: CO_010:0000101
name: 999 other biological status of accession
comment: Specify in descriptor collector's notes.
xref: multicrop passport ontology:CO_020:0000043
is_a: CO_010:0000089 ! BiologicalStatusOfAccessionCode
[Term]
id: CO_010:0000102
name: 99 other collecting or acquisition source
comment: Specify in descriptor collector's notes.
xref: multicrop passport ontology:CO_020:0000077
is_a: CO_010:0000065 ! CollectingOrAcquisitionSourceCode
[Term]
id: CO_010:0000103
name: 99 other cropping system
comment: Specify in descriptor collector's notes.
is_a: CO_010:0000277 ! CroppingSystemCode
[Term]
id: CO_010:0000104
name: PartsOfThePlantUsedCode
is_a: CO_010:0000064 ! PassportDescriptorCode
relationship: CO_010:0000001 CO_010:0000035 ! parts of the plant used
[Term]
id: CO_010:0000105
name: 1 root
is_a: CO_010:0000104 ! PartsOfThePlantUsedCode
[Term]
id: CO_010:0000106
name: 2 stem
synonym: "trunk" RELATED []
is_a: CO_010:0000104 ! PartsOfThePlantUsedCode
[Term]
id: CO_010:0000107
name: 3 bark
is_a: CO_010:0000104 ! PartsOfThePlantUsedCode
[Term]
id: CO_010:0000108
name: 4 leaf
is_a: CO_010:0000104 ! PartsOfThePlantUsedCode
[Term]
id: CO_010:0000109
name: 5 flower
is_a: CO_010:0000104 ! PartsOfThePlantUsedCode
[Term]
id: CO_010:0000110
name: 6 fruit
is_a: CO_010:0000104 ! PartsOfThePlantUsedCode
[Term]
id: CO_010:0000111
name: 99 other cultivar origin
comment: Specify in descriptor collector's notes.
is_a: CO_010:0000258 ! CultivarOriginCode
[Term]
id: CO_010:0000112
name: TypeOfSampleCollectedCode
comment: Specify in collector's notes.
is_a: CO_010:0000064 ! PassportDescriptorCode
relationship: CO_010:0000001 CO_010:0000036 ! type of sample collected
[Term]
id: CO_010:0000113
name: 99 other fertilizer application
comment: Specify in descriptor collector's notes.
is_a: CO_010:0000371 ! FertilizerApplicationCode
[Term]
id: CO_010:0000114
name: 1 seed
is_a: CO_010:0000319 ! TypeOfPlantMaterialCode
[Term]
id: CO_010:0000115
name: 4 shoot
comment: Also for budwood or stem cutting.
is_a: CO_010:0000112 ! TypeOfSampleCollectedCode
[Term]
id: CO_010:0000116
name: 99 other frequency of use of the plant
comment: Specify in descriptor collector's notes.
is_a: CO_010:0000360 ! FrequencyOfUseOfThePlantCode
[Term]
id: CO_010:0000117
name: TypeOfMaterialReceivedCode
is_a: CO_010:0000064 ! PassportDescriptorCode
relationship: CO_010:0000001 CO_010:0000060 ! type of material received
[Term]
id: CO_010:0000118
name: 1 in vitro plant
is_a: CO_010:0000117 ! TypeOfMaterialReceivedCode
[Term]
id: CO_010:0000119
name: 3 sucker
is_a: CO_010:0000117 ! TypeOfMaterialReceivedCode
[Term]
id: CO_010:0000120
name: 99 other method of use
comment: Specify in descriptor collector's notes.
is_a: CO_010:0000365 ! MethodOfUseCode
[Term]
id: CO_010:0000121
name: 4 bud
is_a: CO_010:0000117 ! TypeOfMaterialReceivedCode
[Term]
id: CO_010:0000122
name: 7 peel
is_a: CO_010:0000104 ! PartsOfThePlantUsedCode
[Term]
id: CO_010:0000123
name: 99 other plant use
comment: Specify in descriptor collector's notes.
is_a: CO_010:0000075 ! PlantUseCode
[Term]
id: CO_010:0000124
name: management descriptor
comment: Management descriptors: These provide the basis for the management of accessions in the genebank and assist with their multiplication and regeneration.
is_a: CO_010:0000232 ! germplasm descriptor
relationship: CO_010:0000002 CO_010:0000044 ! accession
[Term]
id: CO_010:0000125
name: population identification
comment: Collecting number, pedigree, cultivar name, etc. depending on the population type.
is_a: CO_010:0000124 ! management descriptor
is_a: CO_010:0000345 ! multiplication descriptor
is_a: CO_010:0000375 ! regeneration descriptor
[Term]
id: CO_010:0000126
name: location of safety duplicates
comment: Code of the institute where a safety duplicate of the accession is maintained. Follows INSTCODE standard.
synonym: "DUPLSITE" EXACT []
xref: multicrop passport ontology:CO_020:0000026
is_a: CO_010:0000124 ! management descriptor
is_a: CO_010:0000154 ! institute code
[Term]
id: CO_010:0000127
name: 99 other propagation method
comment: Specify in descriptor collector's notes.
is_a: CO_010:0000278 ! PropagationMethodCode
[Term]
id: CO_010:0000128
name: 99 other regeneration process
comment: Specify in descriptor remarks.
is_a: CO_010:0000326 ! RegenerationProcessCode
[Term]
id: CO_010:0000129
name: availability for exchange
is_a: CO_010:0000124 ! management descriptor
[Term]
id: CO_010:0000130
name: export procedure
is_a: CO_010:0000231 ! import or export activity
[Term]
id: CO_010:0000131
name: 5 other status of plantation
comment: Specify in descriptor collector's notes.
is_a: CO_010:0000081 ! StatusOfPlantationCode
[Term]
id: CO_010:0000132
name: import permit from receiving country needed
is_a: CO_010:0000130 ! export procedure
[Term]
id: CO_010:0000133
name: export permit needed
is_a: CO_010:0000130 ! export procedure
[Term]
id: CO_010:0000134
name: pre and postmovement activities data
is_a: CO_010:0000124 ! management descriptor
[Term]
id: CO_010:0000135
name: treatment of sample during mission
comment: Note all relevant information on how the sample was treated between its collection and the deposit at its destination.
is_a: CO_010:0000134 ! pre and postmovement activities data
[Term]
id: CO_010:0000136
name: destination of the accession
comment: Note where the sample is sent after it has been collected. Specify the institution, the name of the collection or station, the address and country.
is_a: CO_010:0000134 ! pre and postmovement activities data
[Term]
id: CO_010:0000137
name: type of germplasm storage
comment: If germplasm is maintained under different types of storage, multiple choices are allowed, separated by a semicolon (e.g. 20;30). (Refer to FAO/IPGRI Genebank Standards 1994 for details on storage type.).
synonym: "STORAGE" EXACT []
xref: multicrop passport ontology:CO_020:0000027
is_a: CO_010:0000124 ! management descriptor
[Term]
id: CO_010:0000138
name: import procedure
is_a: CO_010:0000231 ! import or export activity
[Term]
id: CO_010:0000139
name: phytosanitary certificate needed
is_a: CO_010:0000138 ! import procedure
[Term]
id: CO_010:0000140
name: import permit needed
is_a: CO_010:0000138 ! import procedure
[Term]
id: CO_010:0000141
name: quarantine required
is_a: CO_010:0000138 ! import procedure
[Term]
id: CO_010:0000142
name: ManagementDescriptorCode
is_a: CO_010:0000234 ! GermplasmDescriptorCode
[Term]
id: CO_010:0000143
name: TypeOfGermplasmStorageCode
synonym: "TypeOfMaintenanceOfTheAccessionCode" RELATED []
xref: multicrop passport ontology:CO_020:0000078
is_a: CO_010:0000142 ! ManagementDescriptorCode
relationship: CO_010:0000001 CO_010:0000137 ! type of germplasm storage
[Term]
id: CO_010:0000144
name: 20 field collection
synonym: "InVivo collection" RELATED []
xref: multicrop passport ontology:CO_020:0000070
is_a: CO_010:0000143 ! TypeOfGermplasmStorageCode
[Term]
id: CO_010:0000145
name: 30 in vitro collection
comment: An in vitro sample has a characteristic slow growth.
xref: multicrop passport ontology:CO_020:0000071
is_a: CO_010:0000143 ! TypeOfGermplasmStorageCode
[Term]
id: CO_010:0000146
name: 10 seed collection
xref: multicrop passport ontology:CO_020:0000066
is_a: CO_010:0000143 ! TypeOfGermplasmStorageCode
[Term]
id: CO_010:0000147
name: 99 other type of germplasm storage
comment: Specify in descriptor remarks.
xref: multicrop passport ontology:CO_020:0000073
is_a: CO_010:0000143 ! TypeOfGermplasmStorageCode
[Term]
id: CO_010:0000148
name: DestinationOfTheAccessionCode
is_a: CO_010:0000142 ! ManagementDescriptorCode
relationship: CO_010:0000001 CO_010:0000136 ! destination of the accession
[Term]
id: CO_010:0000149
name: 1 final destination of sample
is_a: CO_010:0000148 ! DestinationOfTheAccessionCode
[Term]
id: CO_010:0000150
name: 2 intermediate holding station
is_a: CO_010:0000148 ! DestinationOfTheAccessionCode
[Term]
id: CO_010:0000151
name: entity
xref: GCPDomainModel:CO_000:0000125
is_a: CO_010:0000000 ! GCP germplasm ontology
[Term]
id: CO_010:0000152
name: ancestral data
comment: Information about either pedigree or other description of ancestral information (i.e. parent variety in case of mutant or selection). For example a pedigree 'Hanna/7*Atlas//Turk/8*Atlas' or a description 'mutation found in Hanna', 'selection from Irene' or 'cross involving amongst others Hanna and Irene'.
synonym: "ANCEST" EXACT []
xref: multicrop passport ontology:CO_020:0000021
is_a: CO_010:0000250 ! generated germplasmd descriptor
[Term]
id: CO_010:0000153
name: common crop name
comment: Name of the crop in colloquial language, preferably English (i.e. 'malting barley, 'cauliflower', or 'white cabbage').
synonym: "CROPNAME" EXACT []
xref: multicrop passport ontology:CO_020:0000010
is_a: CO_010:0000249 ! crop name descriptor
[Term]
id: CO_010:0000154
name: institute code
comment: Code of the institute where the accession is maintained. The codes consist of the 3-letter ISO 3166 country code of the country where the institute is located plus number or an acronym as specified in the Institute database that will be made available by FAO. Preliminary codes (i.e. codes not yet incorporated in the FAO Institute database) start with an asterisk followed by a 3-letter ISO 3166 country code and an acronym.
synonym: "INSTCODE" EXACT []
xref: GCPDomainModel:CO_000:0000224
xref: multicrop passport ontology:CO_020:0000001
is_a: CO_010:0000037 ! accession descriptor
[Term]
id: CO_010:0000155
name: breeding institute code
comment: Institute code of the institute that has bred the material. If the holding institute has bred the material, the breeding institute code (BREDCODE) should be the same as the holding institute code (INSTCODE). Follows INSTCODE standard.
synonym: "BREDCODE" EXACT []
xref: multicrop passport ontology:CO_020:0000019
is_a: CO_010:0000154 ! institute code
[Term]
id: CO_010:0000156
name: donor institute code
comment: Code for the donor institute. Follows INSTCODE standard.
synonym: "DONORCODE" EXACT []
xref: multicrop passport ontology:CO_020:0000023
is_a: CO_010:0000154 ! institute code
is_a: CO_010:0000225 ! donated germplasm descriptor
[Term]
id: CO_010:0000157
name: species authority
comment: Provide the authority for the species name.
synonym: "SPAUTHOR" EXACT []
xref: multicrop passport ontology:CO_020:0000007
is_a: CO_010:0000223 ! taxonomy descriptor
[Term]
id: CO_010:0000158
name: subtaxa authority
comment: Provide the subtaxa authority at the most detailed taxonomic level.
synonym: "SUBTAUTHOR" EXACT []
xref: multicrop passport ontology:CO_020:0000009
is_a: CO_010:0000223 ! taxonomy descriptor
[Term]
id: CO_010:0000159