diff --git a/docs/source/documentation/brainglobe-utils/transform-widget.md b/docs/source/documentation/brainglobe-utils/transform-widget.md index 475536b8..0c380628 100644 --- a/docs/source/documentation/brainglobe-utils/transform-widget.md +++ b/docs/source/documentation/brainglobe-utils/transform-widget.md @@ -46,7 +46,8 @@ Before you use this widget you need three things: 3. Some points defined in the raw data space, e.g. cells detected by [cellfinder](/documentation/cellfinder/index). ```{hint} -This widget will support any points that can be loaded into napari. Many file formats (e.g. the BrainGlobe xml format) +This widget will support any points that can be loaded into napari. Many file formats (e.g. the BrainGlobe xml format, +or a [csv from BiaPy](https://biapy.readthedocs.io/en/latest/tutorials/detection/brain_cell_detection.html)) can be loaded by dragging and dropping them onto the napari window. ``` diff --git a/docs/source/tutorials/images/biapy.png b/docs/source/tutorials/images/biapy.png new file mode 100644 index 00000000..fc1449d8 Binary files /dev/null and b/docs/source/tutorials/images/biapy.png differ diff --git a/docs/source/tutorials/index.md b/docs/source/tutorials/index.md index a994c5c0..abd4071c 100644 --- a/docs/source/tutorials/index.md +++ b/docs/source/tutorials/index.md @@ -87,7 +87,20 @@ Analyze and visualize bulk fluorescence tracing data :link-type: doc Whole brain cell detection and registration ::: +:::: + +## Related tutorials +These are tutorials hosted elsewhere that may be useful to BrainGlobe users. +::::{grid} 1 2 2 3 +:gutter: 3 + +:::{grid-item-card} {fas}`brain;sd-text-primary` Cell detection with BiaPy +:img-bottom: images/biapy.png +:link: https://biapy.readthedocs.io/en/latest/tutorials/detection/brain_cell_detection.html +:link-type: url +Whole-brain microscopy analysis with BrainGlobe and BiaPy +::: :::: ```{toctree} @@ -105,4 +118,5 @@ cellfinder-retraining silicon-probe-tracking tracing-tracking brainmapper/index + ```