diff --git a/_sources/uploading_to_cpg.md b/_sources/uploading_to_cpg.md index 8a40a33..81902aa 100644 --- a/_sources/uploading_to_cpg.md +++ b/_sources/uploading_to_cpg.md @@ -54,8 +54,11 @@ The `--acl` flag gives the Cell Painting Gallery full ownership of the uploaded `DESTINATION` is the S3 path within the `staging-cellpainting-gallery` (that should match `cellpainting-gallery`). e.g. -`aws s3 sync /Users/eweisbar/Batch8_images s3://cpg0123-example/broad/images/2024_04_01_Batch8/images --profile cpg_staging --acl bucket-owner-full-control` -`aws s3 sync /Users/eweisbar/Batch8_profiles s3://cpg0123-example/broad/workspace/profiles/2024_04_01_Batch8/ --profile cpg_staging --acl bucket-owner-full-control` + +```bash +aws s3 sync /Users/eweisbar/Batch8_images s3://staging-cellpainting-gallery/cpg0123-example/broad/images/2024_04_01_Batch8/images/ --profile cpg_staging --acl bucket-owner-full-control +aws s3 sync /Users/eweisbar/Batch8_profiles s3://staging-cellpainting-gallery/cpg0123-example/broad/workspace/profiles/2024_04_01_Batch8/ --profile cpg_staging --acl bucket-owner-full-control +``` ## 6. Create `create_credentials.sh` diff --git a/uploading_to_cpg.html b/uploading_to_cpg.html index 38dea82..7de1a00 100644 --- a/uploading_to_cpg.html +++ b/uploading_to_cpg.html @@ -460,9 +460,11 @@

5. Prepare your AWS CLI data transfer commands--acl flag gives the Cell Painting Gallery full ownership of the uploaded files.
SOURCE is where the files are on your storage and can be a local absolute or relative path or can be an S3 location of your S3 bucket.
DESTINATION is the S3 path within the staging-cellpainting-gallery (that should match cellpainting-gallery).

-

e.g.
-aws s3 sync /Users/eweisbar/Batch8_images s3://cpg0123-example/broad/images/2024_04_01_Batch8/images --profile cpg_staging --acl bucket-owner-full-control
-aws s3 sync /Users/eweisbar/Batch8_profiles s3://cpg0123-example/broad/workspace/profiles/2024_04_01_Batch8/ --profile cpg_staging --acl bucket-owner-full-control

+

e.g.

+
aws s3 sync /Users/eweisbar/Batch8_images s3://staging-cellpainting-gallery/cpg0123-example/broad/images/2024_04_01_Batch8/images/ --profile cpg_staging --acl bucket-owner-full-control 
+aws s3 sync /Users/eweisbar/Batch8_profiles s3://staging-cellpainting-gallery/cpg0123-example/broad/workspace/profiles/2024_04_01_Batch8/ --profile cpg_staging --acl bucket-owner-full-control
+
+

6. Create create_credentials.sh#