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HTSJDK 3.0: Create a Read interface #5267

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droazen opened this issue Oct 4, 2018 · 3 comments
Open

HTSJDK 3.0: Create a Read interface #5267

droazen opened this issue Oct 4, 2018 · 3 comments
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@lbergelson
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HTSJDK HTSJDK3
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Engine-Q12019

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@droazen
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droazen commented Oct 4, 2018

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@droazen droazen added this to the Engine-Q42018 milestone Oct 4, 2018
@magicDGS
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magicDGS commented Oct 4, 2018

I have already a design, waiting for the review of the CIGAR part...

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The previos message was written a bit quick from my phone. The concrete PR is samtools/htsjdk-next-beta#12

@lbergelson - would like to have a look to it, or do you prefer that I open another one with the interface on top of the CIGAR part? I prefer to go step by step, as it is clearer than adding too many classes to review at once...

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Tracked by in htsjdk3 in samtools/htsjdk-next-beta#1

@droazen droazen modified the milestones: Engine-Q42018, Engine-Q12019 Feb 4, 2019
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HTSJDK HTSJDK3
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@droazen @lbergelson @magicDGS