From 3b2d80fea24bfd2f0f2c85d75e1962b106307948 Mon Sep 17 00:00:00 2001
From: ekiernan <55763654+ekiernan@users.noreply.github.com>
Date: Wed, 29 May 2024 20:32:46 -0400
Subject: [PATCH] Delete 10k_pbmc.json (#1291)

---
 .../test_inputs/Scientific/10k_pbmc.json      | 33 -------------------
 1 file changed, 33 deletions(-)
 delete mode 100644 pipelines/skylab/paired_tag/test_inputs/Scientific/10k_pbmc.json

diff --git a/pipelines/skylab/paired_tag/test_inputs/Scientific/10k_pbmc.json b/pipelines/skylab/paired_tag/test_inputs/Scientific/10k_pbmc.json
deleted file mode 100644
index 888439d2a6..0000000000
--- a/pipelines/skylab/paired_tag/test_inputs/Scientific/10k_pbmc.json
+++ /dev/null
@@ -1,33 +0,0 @@
-{
-"PairedTag.annotations_gtf":"gs://gcp-public-data--broad-references/hg38/v0/star/v2_7_10a/modified_v43.annotation.gtf",
-  "PairedTag.gex_i1_fastq":[
-  "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_gex_S1_L001_I1_001.fastq.gz",
-  "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_gex_S1_L002_I1_001.fastq.gz"
-],
-  "PairedTag.input_id":"10k_PBMC",
-  "PairedTag.gex_r1_fastq":[
-    "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_gex_S1_L001_R1_001.fastq.gz",
-    "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_gex_S1_L002_R1_001.fastq.gz"
-  ],
-  "PairedTag.gex_r2_fastq":[
-    "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_gex_S1_L001_R2_001.fastq.gz",
-    "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_gex_S1_L002_R2_001.fastq.gz"
-  ],
-  "PairedTag.atac_r1_fastq":[
-    "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_atac_S1_L001_R1_001.fastq.gz",
-    "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_atac_S1_L002_R1_001.fastq.gz"
-  ],
-  "PairedTag.atac_r2_fastq":[
-    "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_atac_S1_L001_R2_001.fastq.gz",
-    "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_atac_S1_L002_R2_001.fastq.gz"
-  ],
-  "PairedTag.atac_r3_fastq":[
-    "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_atac_S1_L001_R3_001.fastq.gz",
-    "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_atac_S1_L002_R3_001.fastq.gz"
-  ],
-  "PairedTag.ref_genome_fasta":"gs://gcp-public-data--broad-references/hg38/v0/GRCh38.primary_assembly.genome.fa",
-  "PairedTag.tar_bwa_reference":"gs://gcp-public-data--broad-references/hg38/v0/bwa/v2_2_1/bwa-mem2-2.2.1-Human-GENCODE-build-GRCh38.tar",
-  "PairedTag.tar_star_reference":"gs://gcp-public-data--broad-references/hg38/v0/star/v2_7_10a/modified_star2.7.10a-Human-GENCODE-build-GRCh38-43.tar",
-  "PairedTag.chrom_sizes":"gs://broad-gotc-test-storage/Multiome/input/hg38.chrom.sizes",
-  "PairedTag.preindex":"false"
-}
\ No newline at end of file