diff --git a/pipelines/skylab/paired_tag/test_inputs/Scientific/10k_pbmc.json b/pipelines/skylab/paired_tag/test_inputs/Scientific/10k_pbmc.json deleted file mode 100644 index 888439d2a6..0000000000 --- a/pipelines/skylab/paired_tag/test_inputs/Scientific/10k_pbmc.json +++ /dev/null @@ -1,33 +0,0 @@ -{ -"PairedTag.annotations_gtf":"gs://gcp-public-data--broad-references/hg38/v0/star/v2_7_10a/modified_v43.annotation.gtf", - "PairedTag.gex_i1_fastq":[ - "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_gex_S1_L001_I1_001.fastq.gz", - "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_gex_S1_L002_I1_001.fastq.gz" -], - "PairedTag.input_id":"10k_PBMC", - "PairedTag.gex_r1_fastq":[ - "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_gex_S1_L001_R1_001.fastq.gz", - "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_gex_S1_L002_R1_001.fastq.gz" - ], - "PairedTag.gex_r2_fastq":[ - "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_gex_S1_L001_R2_001.fastq.gz", - "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_gex_S1_L002_R2_001.fastq.gz" - ], - "PairedTag.atac_r1_fastq":[ - "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_atac_S1_L001_R1_001.fastq.gz", - "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_atac_S1_L002_R1_001.fastq.gz" - ], - "PairedTag.atac_r2_fastq":[ - "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_atac_S1_L001_R2_001.fastq.gz", - "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_atac_S1_L002_R2_001.fastq.gz" - ], - "PairedTag.atac_r3_fastq":[ - "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_atac_S1_L001_R3_001.fastq.gz", - "gs://broad-gotc-test-storage/Multiome/input/scientific/10k_PBMC_Multiome/10k_PBMC_Multiome_nextgem_Chromium_Controller_atac_S1_L002_R3_001.fastq.gz" - ], - "PairedTag.ref_genome_fasta":"gs://gcp-public-data--broad-references/hg38/v0/GRCh38.primary_assembly.genome.fa", - "PairedTag.tar_bwa_reference":"gs://gcp-public-data--broad-references/hg38/v0/bwa/v2_2_1/bwa-mem2-2.2.1-Human-GENCODE-build-GRCh38.tar", - "PairedTag.tar_star_reference":"gs://gcp-public-data--broad-references/hg38/v0/star/v2_7_10a/modified_star2.7.10a-Human-GENCODE-build-GRCh38-43.tar", - "PairedTag.chrom_sizes":"gs://broad-gotc-test-storage/Multiome/input/hg38.chrom.sizes", - "PairedTag.preindex":"false" -} \ No newline at end of file