From ebeaa0102fc9eb0f23a30d734fddc43b0fd70d74 Mon Sep 17 00:00:00 2001 From: Yossi Farjoun Date: Sun, 23 Oct 2022 14:58:40 -0400 Subject: [PATCH] Add option for requestor pays into joint genotyper (import gvcf) --- tasks/broad/JointGenotypingTasks.wdl | 3 +++ 1 file changed, 3 insertions(+) diff --git a/tasks/broad/JointGenotypingTasks.wdl b/tasks/broad/JointGenotypingTasks.wdl index 6c94f9e0d2..c3c8d828f0 100644 --- a/tasks/broad/JointGenotypingTasks.wdl +++ b/tasks/broad/JointGenotypingTasks.wdl @@ -88,6 +88,8 @@ task ImportGVCFs { Int disk_size Int batch_size + String? project_for_requester_pays + String gatk_docker = "us.gcr.io/broad-gatk/gatk:4.2.6.1" } @@ -113,6 +115,7 @@ task ImportGVCFs { --sample-name-map ~{sample_name_map} \ --reader-threads 5 \ --merge-input-intervals \ + ~{"--gcs-project-for-requester-pays " + project_for_requester_pays} \ --consolidate tar -cf ~{workspace_dir_name}.tar ~{workspace_dir_name}