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fuzzyrule.pl
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#!/usr/bin/perl
######## Fuzzy-AllerPred #####################
# Developed by SARAVANAN VIJAYAKUMAR
# Centre for Bioinformatics, Pondicherry University
# Date: 14-2-2013
#
######Required Modules
use Cwd qw(abs_path);
use lib abs_path(); #setting module dependnecy path ! Do not change unless you are sure !
use AI::FuzzyInference;
my $AFuzz = new AI::FuzzyInference;
$ADIn = @ARGV[0];
$MEIn = @ARGV[1];
$GAIn = @ARGV[2];
$WHIn = @ARGV[3];
$GHIn = @ARGV[4];
####Adaboost member (input)
$AFuzz->inVar('AdaBoost', 0, 1,
Allergen => [-0.1, 0,
0, 1,
0.2, 1,
0.5,0],
Nonallergen => [0.5, 0,
0.8, 1,
1, 1,
1.1,0],
);
####MEME member (input)
$AFuzz->inVar('MEME', 0, 1,
Significant => [-0.1, 0,
0, 1,
0.2, 1,
0.5, 0],
Nonsignificant => [0.5, 0,
0.8, 1,
1, 1,
1.1,0],
);
####GADB member (input)
$AFuzz->inVar('GADB', 0, 1,
Poor => [-0.1, 0,
0, 1,
0.2, 1,
0.5, 0],
Moderate => [0.45, 0,
0.55, 1,
0.7, 1,
0.8,0],
High => [0.75, 0,
0.9, 1,
1, 1,
1.1, 0],
);
####WHO member (input)
$AFuzz->inVar('WHO', 0, 1,
Poor => [-0.1, 0,
0, 1,
0.2, 1,
0.45, 0],
Allowed => [0.4, 0,
0.55, 1,
0.75, 0],
Significant => [0.7, 0,
0.9, 1,
1, 1,
1.1, 0],
);
####GHNA member (input)
$AFuzz->inVar('GHNA', 0, 1,
Poor => [-0.1, 0,
0, 1,
0.2, 1,
0.5, 0],
Moderate => [0.45, 0,
0.55, 1,
0.7, 1,
0.8,0],
High => [0.75, 0,
0.9, 1,
1, 1,
1.1, 0],
);
####hit (output)
$AFuzz->outVar('AllerFIS', 0, 1,
NA => [-0.1, 0,
0, 1,
0.2, 1,
0.35, 0],
MA => [0.35, 0,
0.45, 1,
0.55, 0],
A => [0.55, 0,
0.68, 1,
0.8, 0],
PA => [0.8, 0,
0.9, 1,
1, 1,
1.1, 0],
);
$AFuzz->addRule(
# 'Ada=nonaller & MEME=nsig' => 'hit=NA',
# 'Ada=nonaller & MEME=sig' => 'hit=MA',
# 'Ada=aller & MEME=nsig' => 'hit=MA',
# 'Ada=aller & MEME=sig' => 'hit=PA',
'AdaBoost=Allergen & MEME=Significant & GADB=High & WHO=Significant & GHNA=Poor' => 'AllerFIS=PA',
'AdaBoost=Allergen & MEME=Significant & GADB=High & WHO=Significant & GHNA=Moderate' => 'AllerFIS=PA',
'AdaBoost=Allergen & MEME=Significant & GADB=High & WHO=Significant & GHNA=High' => 'AllerFIS=MA',
'AdaBoost=Allergen & MEME=Significant & GADB=High & WHO=Allowed & GHNA=Poor' => 'AllerFIS=PA',
'AdaBoost=Allergen & MEME=Significant & GADB=High & WHO=Allowed & GHNA=Moderate' => 'AllerFIS=A',
'AdaBoost=Allergen & MEME=Significant & GADB=High & WHO=Allowed & GHNA=High' => 'AllerFIS=MA',
'AdaBoost=Allergen & MEME=Significant & GADB=High & WHO=Poor & GHNA=Poor' => 'AllerFIS=A',
'AdaBoost=Allergen & MEME=Significant & GADB=High & WHO=Poor & GHNA=Moderate' => 'AllerFIS=MA',
'AdaBoost=Allergen & MEME=Significant & GADB=High & WHO=Poor & GHNA=High' => 'AllerFIS=MA',
'AdaBoost=Allergen & MEME=Significant & GADB=Moderate & WHO=Significant & GHNA=Poor' => 'AllerFIS=PA',
'AdaBoost=Allergen & MEME=Significant & GADB=Moderate & WHO=Significant & GHNA=Moderate' => 'AllerFIS=A',
'AdaBoost=Allergen & MEME=Significant & GADB=Moderate & WHO=Significant & GHNA=High' => 'AllerFIS=MA',
'AdaBoost=Allergen & MEME=Significant & GADB=Moderate & WHO=Allowed & GHNA=Poor' => 'AllerFIS=A',
'AdaBoost=Allergen & MEME=Significant & GADB=Moderate & WHO=Allowed & GHNA=Moderate' => 'AllerFIS=MA',
'AdaBoost=Allergen & MEME=Significant & GADB=Moderate & WHO=Allowed & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Significant & GADB=Moderate & WHO=Poor & GHNA=Poor' => 'AllerFIS=MA',
'AdaBoost=Allergen & MEME=Significant & GADB=Moderate & WHO=Poor & GHNA=Moderate' => 'AllerFIS=MA',
'AdaBoost=Allergen & MEME=Significant & GADB=Moderate & WHO=Poor & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Significant & GADB=Poor & WHO=Significant & GHNA=Poor' => 'AllerFIS=A',
'AdaBoost=Allergen & MEME=Significant & GADB=Poor & WHO=Significant & GHNA=Moderate' => 'AllerFIS=A',
'AdaBoost=Allergen & MEME=Significant & GADB=Poor & WHO=Significant & GHNA=High' => 'AllerFIS=MA',
'AdaBoost=Allergen & MEME=Significant & GADB=Poor & WHO=Allowed & GHNA=Poor' => 'AllerFIS=MA',
'AdaBoost=Allergen & MEME=Significant & GADB=Poor & WHO=Allowed & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Significant & GADB=Poor & WHO=Allowed & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Significant & GADB=Poor & WHO=Poor & GHNA=Poor' => 'AllerFIS=A',
'AdaBoost=Allergen & MEME=Significant & GADB=Poor & WHO=Poor & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Significant & GADB=Poor & WHO=Poor & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=High & WHO=Significant & GHNA=Poor' => 'AllerFIS=A',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=High & WHO=Significant & GHNA=Moderate' => 'AllerFIS=A',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=High & WHO=Significant & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=High & WHO=Allowed & GHNA=Poor' => 'AllerFIS=A',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=High & WHO=Allowed & GHNA=Moderate' => 'AllerFIS=A',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=High & WHO=Allowed & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=High & WHO=Poor & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=High & WHO=Poor & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=High & WHO=Poor & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Moderate & WHO=Significant & GHNA=Poor' => 'AllerFIS=A',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Moderate & WHO=Significant & GHNA=Moderate' => 'AllerFIS=MA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Moderate & WHO=Significant & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Moderate & WHO=Allowed & GHNA=Poor' => 'AllerFIS=MA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Moderate & WHO=Allowed & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Moderate & WHO=Allowed & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Moderate & WHO=Poor & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Moderate & WHO=Poor & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Moderate & WHO=Poor & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Poor & WHO=Significant & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Poor & WHO=Significant & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Poor & WHO=Significant & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Poor & WHO=Allowed & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Poor & WHO=Allowed & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Poor & WHO=Allowed & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Poor & WHO=Poor & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Poor & WHO=Poor & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Allergen & MEME=Nonsignificant & GADB=Poor & WHO=Poor & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=High & WHO=Significant & GHNA=Poor' => 'AllerFIS=PA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=High & WHO=Significant & GHNA=Moderate' => 'AllerFIS=A',
'AdaBoost=Nonallergen & MEME=Significant & GADB=High & WHO=Significant & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=High & WHO=Allowed & GHNA=Poor' => 'AllerFIS=A',
'AdaBoost=Nonallergen & MEME=Significant & GADB=High & WHO=Allowed & GHNA=Moderate' => 'AllerFIS=MA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=High & WHO=Allowed & GHNA=High' => 'AllerFIS=MA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=High & WHO=Poor & GHNA=Poor' => 'AllerFIS=A',
'AdaBoost=Nonallergen & MEME=Significant & GADB=High & WHO=Poor & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=High & WHO=Poor & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Moderate & WHO=Significant & GHNA=Poor' => 'AllerFIS=A',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Moderate & WHO=Significant & GHNA=Moderate' => 'AllerFIS=MA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Moderate & WHO=Significant & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Moderate & WHO=Allowed & GHNA=Poor' => 'AllerFIS=A',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Moderate & WHO=Allowed & GHNA=Moderate' => 'AllerFIS=MA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Moderate & WHO=Allowed & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Moderate & WHO=Poor & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Moderate & WHO=Poor & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Moderate & WHO=Poor & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Poor & WHO=Significant & GHNA=Poor' => 'AllerFIS=MA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Poor & WHO=Significant & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Poor & WHO=Significant & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Poor & WHO=Allowed & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Poor & WHO=Allowed & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Poor & WHO=Allowed & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Poor & WHO=Poor & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Poor & WHO=Poor & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Significant & GADB=Poor & WHO=Poor & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=High & WHO=Significant & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=High & WHO=Significant & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=High & WHO=Significant & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=High & WHO=Allowed & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=High & WHO=Allowed & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=High & WHO=Allowed & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=High & WHO=Poor & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=High & WHO=Poor & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=High & WHO=Poor & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Moderate & WHO=Significant & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Moderate & WHO=Significant & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Moderate & WHO=Significant & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Moderate & WHO=Allowed & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Moderate & WHO=Allowed & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Moderate & WHO=Allowed & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Moderate & WHO=Poor & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Moderate & WHO=Poor & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Moderate & WHO=Poor & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Poor & WHO=Significant & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Poor & WHO=Significant & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Poor & WHO=Significant & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Poor & WHO=Allowed & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Poor & WHO=Allowed & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Poor & WHO=Allowed & GHNA=High' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Poor & WHO=Poor & GHNA=Poor' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Poor & WHO=Poor & GHNA=Moderate' => 'AllerFIS=NA',
'AdaBoost=Nonallergen & MEME=Nonsignificant & GADB=Poor & WHO=Poor & GHNA=High' => 'AllerFIS=NA',
);
####Rule ENDS!!!!
#####Defuzzyfy
$AFuzz->compute(AdaBoost=>$ADIn, MEME=>$MEIn, GADB=>$GAIn, WHO=>$WHIn, GHNA=>$GHIn);
$Weight = $AFuzz->value(AllerFIS);
######
##Convert weight to Lingual
if($Weight<=0.35){
print "NA";
}elsif($Weight>0.35 && $Weight<=0.5){
print "MA";
}elsif($Weight>0.5 && $Weight<=0.80){
print "A";
}elsif($Weight>0.8 && $Weight<=1){
print "PA";
}
#######ENDS!!!