build.xml

<project name="polyGembler" default="dist" basedir=".">
    
    <description>
        polyGembler: Pedigree Haplotype analyse toolkit, version 1.1
        The polyGembler project may be distributed under the terms of 
        the GNU Lesser General Public License
    </description>

    <property name="debuglevel" value="source,lines,vars"/>
    <property name="target" value="1.8"/>
    <property name="source" value="1.8"/>

    <!-- set global properties for this build -->
    <property name="src" location="src"/>
    <property name="dist" location="dist"/>
    <property name="build" location="build"/>
    <property name="lib" location="lib"/>
    
    <property name="polyGembler" location="${dist}\polyGembler-1.1-jar-with-dependencies.jar"/>
    
    <path id="build.class.path">
        <fileset dir="${lib}">
            <include name="*.jar"/>
            <include name="*.zip"/>
        </fileset>
    </path>

    <pathconvert property="manifest.classpath" pathsep=" ">
        <path refid="build.class.path"/>
        <mapper>
            <chainedmapper>
                <flattenmapper/>
                <globmapper from="*.jar" to="lib/*.jar"/>
            </chainedmapper>
        </mapper>
    </pathconvert>
    
    
    <target name="init">
        
        <!-- Create the time stamp -->
        <tstamp>
            <format property="" pattern=""/>
        </tstamp>
        
        <!-- Create the build directory structure used by compile -->
        <mkdir dir="${build}"/>
        <mkdir dir="${dist}"/>
        
    </target>
    
    <target name="compile" depends="init" description="compile the source">
        <!-- Compile the java code from ${src} into ${build} -->
        <javac includeantruntime="false" srcdir="${src}" destdir="${build}" debug="true">
            <classpath>
                <pathelement path="${lib}"/>
                <fileset dir="${lib}">
                    <include name="**/*.jar"/>
                    <include name="**/*.zip"/>
                </fileset>
            </classpath>
        </javac>
    </target>
    
    <target name="dist" depends="clean, compile" description="distribution">
        
        <!-- Create the distribution directory -->
        <mkdir dir="${dist}"/>
        
        <copy todir="${build}" description="copy all files except java source">
            <fileset dir="${src}">
            	<include name="**/*"/>
            	<exclude name="**/*.java"/>
            </fileset>
        </copy>
        
        <jar jarfile="${polyGembler}" basedir="${build}">
            <manifest>
                <attribute name="Built-by" value="${user.name}" />
                <attribute name="Main-Class" value="cz1.appl.PolyGembler"/>
                <attribute name="Class-Path" value="${manifest.classpath}"/>
            </manifest>
            <fileset dir="${build}" includes="**/*.class" />
            <zipgroupfileset dir="${lib}" includes="**/*.jar" />
        </jar>

    </target>

    <target name="clean" description="clean up">
        <delete dir="${build}"/>
    </target>
    
</project>