v5.3.16

✨ Enhancements

• Persist text color on icon in group comparison buttons @zhx828 (#4663)
• Add VEP link in reVUE tooltip @leexgh (#4661)

🐛 Bug Fixes

• Fix Study view charts layout reset on any operation @kalletlak (#4674)

👷‍♀️ Testing, Configuration & Deployment

• Fix api clients and update screenshot after gene update @alisman (#4675)

🧰 Maintenance

• Update Genome Nexus API clients @leexgh (#4676)

📐 Prototype (Internal Use)

• Add custom url handling for resource tab iframes (enables state persistence for Minerva viewer) @alisman (#4673)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.15...v5.3.16
• Frontend: v5.3.15...v5.3.16

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.15

👷‍♀️ Testing, Configuration & Deployment

• Adjust e2e spec after change in number of genes @alisman (#4671)
• Restore skipped annotation-filter-menu specs @BasLee (#4658)

🧰 Maintenance

• Update API docs @dippindots (#4666)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.14...v5.3.15
• Frontend: v5.3.14...v5.3.15

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.14

🧬 Features

• Add mutations table and fisher exact two-sided p value to comparison lollipop @gblaih (#4556)

✨ Enhancements

• ✨ Add Time Range Selection to KM Plots on Study View @haynescd (#4645)

🐛 Bug Fixes

• Fix index page with unauthorized studies: only fetch study tags from authorized studies @BasLee (#4653)

👷‍♀️ Testing, Configuration & Deployment

• Option to disable data download but still allow figure download @h164654156465 (#4662)

👷‍♀️ Testing, Configuration & Deployment

• Update seedDB url for localdb test @dippindots (#4665)
• Update screenshots @alisman (#4660)
• Update e2e after data update @alisman (#4659)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.13...v5.3.14
• Frontend: v5.3.13...v5.3.14

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.13

✨ Enhancements

• Improve tooltips for Altered and Unaltered group columns on comparison page #9718 @h164654156465 (#4649)

🐛 Bug Fixes

• Fix duplicate SV intragenic records in Mutations tab @fuzhaoyuan (#4650)
• Fix case list selection for multi study queries @alisman (#4648)

👷‍♀️ Testing, Configuration & Deployment

• Fix e2e tests for backend sv_counts_endpoint PR @BasLee (#4647)

🧰 Maintenance

• Update api clients @alisman (#4651)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.12...v5.3.13
• Frontend: v5.3.12...v5.3.13

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.12

✨ Enhancements

• Timeline: links if event popover should open in new window when signaled @alisman (#4643)

🐛 Bug Fixes

• Fix custom sample list selection @alisman (#4644)
• Fix infinite reload of sample lists @alisman (#4641)
• Fix duplicate SV intragenic records @fuzhaoyuan (#4642)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.11...v5.3.12
• Frontend: v5.3.11...v5.3.12

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.11

✨ Enhancements

• Feature/ch/10184 support patient filters sent via postdata @haynescd (#4635)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.10...v5.3.11
• Frontend: v5.3.10...v5.3.11

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.10

✨ Enhancements

• Hide reVUE when there is no reVUE mutations in the query @leexgh (#4637)
• Study view KM plot: Updating tooltip and increasing threshold for compact mode @dippindots (#4636)

🐛 Bug Fixes

• Fix add chart button so that it never overlaps tabs @alisman (#4627)

👷‍♀️ Testing, Configuration & Deployment

• Fix localdb @alisman (#4634)

🧰 Maintenance

• Remove redundant makeObservable call @aditygrg2 (#4633)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.9...v5.3.10
• Frontend: v5.3.9...v5.3.10

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.9

🐛 Bug Fixes

• Fix double click on gene query icon in study view @alisman (#4626)

🎨 Style Tweaks

• Adjust toast settings on studyview @alisman (#4628)

🧰 Maintenance

• ⚡ Update GenomeNexus Api sync @haynescd (#4618)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.8...v5.3.9
• Frontend: v5.3.8...v5.3.9

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.8

✨ Enhancements

• Add new "queue" gene icon to study view gene tables @alisman (#4617)
• ✨ Add PatientIdentifiers URL Parameter @haynescd (#4616)
• Add TCGA Pancan pathways to query selector @inodb (#4610)

🐛 Bug Fixes

• Fix profile filtering when adding Generic Entity IDs in Oncoprint @oplantalech @alisman (#4596)

👷‍♀️ Testing, Configuration & Deployment

• update screenshots after oncokb change @alisman (#4623)

🧰 Maintenance

• Update svg2pdf to fix broken Overlap charts download @dippindots (#4601)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.7...v5.3.8
• Frontend: v5.3.7...v5.3.8

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.7

🧬 Features

• Structural variants tab on results view (phase 1) @fuzhaoyuan (#4588)

✨ Enhancements

• 🔧 Add configurability for StudyDownloadUrl @haynescd (#4602)
• Filter Clinical Attribute Charts when priority is -1 @haynescd (#4598)
• Add a configurable legend to timeline tracks @alisman (#4593)

🐛 Bug Fixes

• Correct sample icon coloring on the patient view @gblaih (#4613)
• Fix broken civic links @onursumer (#4612)

👷‍♀️ Testing, Configuration & Deployment

• Disable keycloak caching for localdb tests @dippindots (#4615)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.6...v5.3.7
• Frontend: v5.3.6...v5.3.7

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning