From ef669c62265d9dcaaa29b0effef8d71e46a1d51b Mon Sep 17 00:00:00 2001 From: "Jeremy R. Easton-Marks" Date: Mon, 6 Nov 2023 15:39:10 -0600 Subject: [PATCH] Update validate-data.yml Download and install core module to validate data --- .github/workflows/validate-data.yml | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/.github/workflows/validate-data.yml b/.github/workflows/validate-data.yml index 05aabca2f21..f5c113211fd 100644 --- a/.github/workflows/validate-data.yml +++ b/.github/workflows/validate-data.yml @@ -9,11 +9,19 @@ jobs: uses: actions/checkout@v2 with: path: ./cbioportal + - name: 'Download core module' + working-directory: ./cbioportal + run: | + wget - name: 'Validate tests' working-directory: ./cbioportal run: | docker run -v ${PWD}:/cbioportal python:3.6 /bin/sh -c ' cd /cbioportal && + wget https://github.com/cBioPortal/cbioportal-core/releases/download/1.0.1/core-1.0.1.jar -P core/ && + cd core && + jar -xf core-1.0.1.jar && + cd .. && pip install -r requirements.txt && export PYTHONPATH=/cbioportal/core/src/main/scripts && cd /cbioportal/core/src/test/scripts/ &&