mutations tab shows intergenic SV as intragenic

[tmazor]

On the mutations tab, the protein change column shows this event as intragenic:

https://genie.cbioportal.org/results/mutations?cancer_study_list=genie_public&tab_index=tab_visualize&case_set_id=-1&Action=Submit&gene_list=ATM&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Ccna&case_ids=genie_public%3AGENIE-DFCI-002365-6793&geneset_list=%20

But on the patient page, oncopanel and structural variants page, it's clearly an intergenic event:

https://genie.cbioportal.org/patient?sampleId=GENIE-DFCI-002365-6793&studyId=genie_public

The mutations tab needs to also display this as an intergenic event.

[Swayam-code]

Hey @tmazor , I can take this issue. The problem is that the mutations tab is showing an intergenic event as "intragenic," while other pages (like the patient page and structural variants page) correctly display it as "intergenic."

I'll investigate the data pipeline and ensure that the mutations tab reflects the correct event classification by leveraging the same logic and annotations as the structural variants page. This will involve verifying the source of annotations, updating the rendering logic in the mutations tab, and validating consistency across all affected views.

Can you assign this issue to me?