From 8f9d8b0c2148394078cd1d7ab144b913de3a0371 Mon Sep 17 00:00:00 2001 From: rahil19 Date: Tue, 14 Feb 2023 14:37:21 -0500 Subject: [PATCH 1/3] First attempt RNASeq cBIO upload --- public/brca_aurora_2019/case_lists/cases_rna_seq_mrna.txt | 6 ++++++ .../data_mrna_seq_rsem_zscores_ref_all_samples.txt | 3 +++ .../meta_mrna_seq_rsem_zscores_ref_all_samples.txt | 8 ++++++++ 3 files changed, 17 insertions(+) create mode 100644 public/brca_aurora_2019/case_lists/cases_rna_seq_mrna.txt create mode 100644 public/brca_aurora_2019/data_mrna_seq_rsem_zscores_ref_all_samples.txt create mode 100644 public/brca_aurora_2019/meta_mrna_seq_rsem_zscores_ref_all_samples.txt diff --git a/public/brca_aurora_2019/case_lists/cases_rna_seq_mrna.txt b/public/brca_aurora_2019/case_lists/cases_rna_seq_mrna.txt new file mode 100644 index 0000000000..fb16d97a7f --- /dev/null +++ b/public/brca_aurora_2019/case_lists/cases_rna_seq_mrna.txt @@ -0,0 +1,6 @@ +cancer_study_identifier: brca_aurora_2019 +stable_id: brca_aurora_2019_rna_seq_mrna +case_list_name: Samples with mRNA (log2 transformed z-Scores) data +case_list_description: Samples with CNV (log2 transformed z-Scores) data +case_list_category: all_cases_with_mrna_rnaseq_data +case_list_ids: AUR-AFEA-TTP1-A-1-0 AUR-AFEA-TTM4-A-1-1 AUR-AFEA-TTM2-A-1-1 AUR-AFEA-TTM1-A-1-1 AUR-AFEA-TTM3-A-1-1 AUR-AFEA-TTM6-A-1-0 AUR-AFE7-TTP2-A-1-1 AUR-AFE7-TTM2-A-1-1 AUR-AFE7-TTM1-A-1-1 AUR-AFE7-TTM3-A-1-1 AUR-AD9G-TTP1-B-4-0 AUR-AD9G-TTM2-A-1-1 AUR-AD9G-TTM3-A-1-1 AUR-AFE5-TTP1-A-1-0 AUR-AFE5-TTM4-A-1-1 AUR-AFE5-TTM9-A-1-1 AUR-AG0N-TTP1-A-1-0 AUR-AG0N-TTM1-A-1-1 AUR-AG0M-TTP1-A-2-0 AUR-AG0M-TTM1-A-2-1 AUR-AG0J-TTP1-A-1-0 AUR-AG0J-TTM1-A-1-0 AUR-AFSP-TTP1-A-8-0 AUR-AFSP-TTM1-A-8-0 AUR-AF9A-TTP1-A-1-0 AUR-AF9A-TTM1-A-1-1 AUR-AF98-TTP1-A-1-0 AUR-AF98-TTM1-A-1-1 AUR-AF95-TTP1-A-1-0 AUR-AF95-TTM1-A-1-1 AUR-AFSL-TTP1-A-8-0 AUR-AFSL-TTM1-A-8-0 AUR-AFR5-TTP1-A-1-1 AUR-AFR5-TTM1-A-1-1 AUR-AE6Y-TTP1-A-1-0 AUR-AE6Y-TTM1-A-1-1 AUR-AE5H-TTP1-A-1-1 AUR-AE5H-TTM1-A-1-1 AUR-AFUI-TTP1-A-1-0 AUR-AFUI-TTM1-A-1-0 AUR-AER7-TTP1-A-1-0 AUR-AER7-TTM4-A-1-1 AUR-AER6-TTP1-A-1-0 AUR-AER6-TTM2-A-1-1 AUR-AER6-TTM3-A-1-1 AUR-AER6-TTM7-A-1-1 AUR-AER6-TTM9-A-1-1 AUR-AER6-TTM6-A-1-1 AUR-AER6-TTM5-A-1-1 AUR-AER6-TTM1-A-1-1 AUR-AER6-TTM10-A-1-1 AUR-AFEC-TTP2-A-1-1 AUR-AFEC-TTM3-A-1-1 AUR-AFEC-TTM4-A-1-1 AUR-AFEC-TTM6-A-1-1 AUR-AG12-TTP1-A-1-0 AUR-AG12-TTM1-A-1-1 AUR-AERX-TTP1-A-1-0 AUR-AERX-TTM1-A-1-1 AUR-AERW-TTP1-B-1-0 AUR-AERW-TTM1-A-1-1 AUR-AFSO-TTP1-A-8-0 AUR-AFSO-TTM1-A-8-0 AUR-AFR3-TTP1-A-2-1 AUR-AFR3-TTM1-A-1-1 AUR-AE5G-TTP1-A-1-1 AUR-AE5G-TTM1-A-1-1 AUR-AF94-TTP1-A-1-0 AUR-AF94-TTM1-A-1-1 AUR-AFE4-TTP1-A-1-0 AUR-AFE4-TTM1-A-1-1 AUR-AFE4-TTM6-A-1-1 AUR-AFE4-TTM5-A-1-1 AUR-AFUN-TTP1-A-1-0 AUR-AFUN-TTM1-A-1-0 AUR-AFUL-TTP1-A-1-1 AUR-AFUL-TTM1-A-1-1 AUR-AFKB-TTP1-A-10-0 AUR-AFKB-TTM1-A-1-1 AUR-AEPZ-TTP1-A-1-1 AUR-AEPZ-TTM1-A-1-1 AUR-AER8-TTP1-A-1-0 AUR-AER8-TTM2-A-1-1 AUR-AFKF-TTP1-A-10-0 AUR-AFKF-TTM1-A-1-1 AUR-AFUM-TTP1-A-1-0 AUR-AFUM-TTM1-A-1-1 AUR-AFE9-TTP1-A-1-0 AUR-AFE9-TTM1-A-1-1 AUR-AFE9-TTM4-A-1-1 AUR-AFE9-TTM2-A-1-1 AUR-AFE9-TTM3-A-1-1 AUR-AER2-TTP1-A-1-1 AUR-AER2-TTM3-A-1-1 AUR-AER2-TTM1-A-1-1 AUR-AFE6-TTP1-A-1-0 AUR-AFE6-TTM2-A-1-1 AUR-AFE6-TTM1-A-1-1 AUR-AFR4-TTP1-A-1-1 AUR-AFR4-TTM1-A-1-1 AUR-AE6X-TTP1-A-1-0 AUR-AE6X-TTM1-A-1-1 AUR-AFKD-TTP1-A-1-1 AUR-AER4-TTP1-A-1-0 AUR-AD9J-TTP1-B-4-0 AUR-AFUO-TTP1-A-1-0 AUR-AFR2-TTP1-A-1-1 AUR-AERY-TTM1-A-1-1 AUR-ADCB-TTM1-A-1-1 AUR-AD9I-TTM3-A-1-1 AUR-AD9E-TTM1-A-1-1 AUR-AFUP-TTM1-A-1-1 AUR-AFUK-TTM2-A-1-0 AUR-AD9H-TTM1-A-2-1 AUR-AD9E-TTM4-A-1-1 AUR-AD9E-TTM2-A-1-1 AUR-AFUK-TTM1-A-1-0 AUR-AD9H-TTM3-A-1-1 AUR-AD9H-TTM2-A-1-1 AUR-AD9F-TTM3-A-1-1 AUR-AD9F-TTM1-A-1-1 AUR-AD9F-TTM2-A-1-1 AUR-AFUG-TTM1-A-1-1 diff --git a/public/brca_aurora_2019/data_mrna_seq_rsem_zscores_ref_all_samples.txt b/public/brca_aurora_2019/data_mrna_seq_rsem_zscores_ref_all_samples.txt new file mode 100644 index 0000000000..2fde87ccbb --- /dev/null +++ b/public/brca_aurora_2019/data_mrna_seq_rsem_zscores_ref_all_samples.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:19dbe64629f6d5148e474d562a83dad29d2a839afcff723401af975e6edcff48 +size 14960475 diff --git a/public/brca_aurora_2019/meta_mrna_seq_rsem_zscores_ref_all_samples.txt b/public/brca_aurora_2019/meta_mrna_seq_rsem_zscores_ref_all_samples.txt new file mode 100644 index 0000000000..89144ff43e --- /dev/null +++ b/public/brca_aurora_2019/meta_mrna_seq_rsem_zscores_ref_all_samples.txt @@ -0,0 +1,8 @@ +cancer_study_identifier: brca_aurora_2019 +genetic_alteration_type: MRNA_EXPRESSION +datatype: Z-SCORE +stable_id: rna_seq_mrna_median_Zscores +show_profile_in_analysis_tab: true +profile_name: mRNA Expression z-Scores (RNA Seq V2 RSEM) +profile_description: mRNA z-Scores log2 transformed (RNA Seq V2 RSEM) +data_filename: data_mrna_seq_rsem_zscores_ref_all_samples.txt From ca8a0d6b251597bc6398e17a362be61ff0f97cf9 Mon Sep 17 00:00:00 2001 From: rahil19 Date: Thu, 23 Feb 2023 14:14:11 -0500 Subject: [PATCH 2/3] changed dir to brca_aurora_2022 and updated and added remaining files for project --- public/brca_aurora_2022/case_lists/cases_cna.txt | 6 ++++++ public/brca_aurora_2022/case_lists/cases_methylation.txt | 6 ++++++ .../case_lists/cases_rna_seq_mrna.txt | 4 ++-- public/brca_aurora_2022/case_lists/cases_samples_all.txt | 6 ++++++ .../brca_aurora_2022/case_lists/mutation_sequenced.txt | 6 ++++++ public/brca_aurora_2022/data_chemo.txt | 3 +++ public/brca_aurora_2022/data_clinical_patient.txt | 3 +++ public/brca_aurora_2022/data_clinical_sample.txt | 3 +++ public/brca_aurora_2022/data_cna_hg38.seg | 3 +++ public/brca_aurora_2022/data_log2_cna.txt | 3 +++ public/brca_aurora_2022/data_methylation_hm450.txt | 3 +++ public/brca_aurora_2022/data_metsdx.txt | 3 +++ .../data_mrna_seq_rsem_zscores_ref_all_samples.txt | 0 public/brca_aurora_2022/data_mutations.txt | 3 +++ public/brca_aurora_2022/data_resource_definition.txt | 3 +++ public/brca_aurora_2022/data_resources_samples.txt | 3 +++ public/brca_aurora_2022/data_surgery.txt | 3 +++ public/brca_aurora_2022/meta_chemo.txt | 4 ++++ public/brca_aurora_2022/meta_clinical_patient.txt | 4 ++++ public/brca_aurora_2022/meta_clinical_sample.txt | 4 ++++ public/brca_aurora_2022/meta_cna_hg38_seg.txt | 6 ++++++ public/brca_aurora_2022/meta_log2_cna.txt | 8 ++++++++ public/brca_aurora_2022/meta_methylation_hm450.txt | 8 ++++++++ public/brca_aurora_2022/meta_metsdx.txt | 4 ++++ .../meta_mrna_seq_rsem_zscores_ref_all_samples.txt | 2 +- public/brca_aurora_2022/meta_mutations.txt | 9 +++++++++ public/brca_aurora_2022/meta_resource_definition.txt | 3 +++ public/brca_aurora_2022/meta_resource_sample.txt | 3 +++ public/brca_aurora_2022/meta_study.txt | 7 +++++++ public/brca_aurora_2022/meta_surgery.txt | 4 ++++ 30 files changed, 124 insertions(+), 3 deletions(-) create mode 100644 public/brca_aurora_2022/case_lists/cases_cna.txt create mode 100644 public/brca_aurora_2022/case_lists/cases_methylation.txt rename public/{brca_aurora_2019 => brca_aurora_2022}/case_lists/cases_rna_seq_mrna.txt (96%) create mode 100644 public/brca_aurora_2022/case_lists/cases_samples_all.txt create mode 100644 public/brca_aurora_2022/case_lists/mutation_sequenced.txt create mode 100644 public/brca_aurora_2022/data_chemo.txt create mode 100644 public/brca_aurora_2022/data_clinical_patient.txt create mode 100644 public/brca_aurora_2022/data_clinical_sample.txt create mode 100644 public/brca_aurora_2022/data_cna_hg38.seg create mode 100644 public/brca_aurora_2022/data_log2_cna.txt create mode 100644 public/brca_aurora_2022/data_methylation_hm450.txt create mode 100644 public/brca_aurora_2022/data_metsdx.txt rename public/{brca_aurora_2019 => brca_aurora_2022}/data_mrna_seq_rsem_zscores_ref_all_samples.txt (100%) create mode 100644 public/brca_aurora_2022/data_mutations.txt create mode 100644 public/brca_aurora_2022/data_resource_definition.txt create mode 100644 public/brca_aurora_2022/data_resources_samples.txt create mode 100644 public/brca_aurora_2022/data_surgery.txt create mode 100644 public/brca_aurora_2022/meta_chemo.txt create mode 100644 public/brca_aurora_2022/meta_clinical_patient.txt create mode 100644 public/brca_aurora_2022/meta_clinical_sample.txt create mode 100644 public/brca_aurora_2022/meta_cna_hg38_seg.txt create mode 100644 public/brca_aurora_2022/meta_log2_cna.txt create mode 100644 public/brca_aurora_2022/meta_methylation_hm450.txt create mode 100644 public/brca_aurora_2022/meta_metsdx.txt rename public/{brca_aurora_2019 => brca_aurora_2022}/meta_mrna_seq_rsem_zscores_ref_all_samples.txt (88%) create mode 100644 public/brca_aurora_2022/meta_mutations.txt create mode 100644 public/brca_aurora_2022/meta_resource_definition.txt create mode 100644 public/brca_aurora_2022/meta_resource_sample.txt create mode 100644 public/brca_aurora_2022/meta_study.txt create mode 100644 public/brca_aurora_2022/meta_surgery.txt diff --git a/public/brca_aurora_2022/case_lists/cases_cna.txt b/public/brca_aurora_2022/case_lists/cases_cna.txt new file mode 100644 index 0000000000..ff98b40046 --- /dev/null +++ b/public/brca_aurora_2022/case_lists/cases_cna.txt @@ -0,0 +1,6 @@ +cancer_study_identifier: brca_aurora_2022 +stable_id: brca_aurora_2022_cna +case_list_name: CNA +case_list_description: CNA samples +case_list_category: all_cases_with_cna_data +case_list_ids: AUR-AE5H-TTP1-A-1-1 AUR-AEPZ-TTM1-A-1-1 AUR-AER4-TTM2-A-1-1 AUR-AER6-TTM7-A-1-1 AUR-AERX-TTM1-A-1-1 AUR-AF99-TTP1-A-1-0 AUR-AFE4-TTM4-A-1-1 AUR-AFE5-TTM4-A-1-1 AUR-ADCB-TTM1-A-1-1 AUR-AEPZ-TTP1-A-1-1 AUR-AER4-TTP1-A-1-0 AUR-AER6-TTM10-A-1-1 AUR-AER6-TTM9-A-1-1 AUR-AER8-TTM1-A-1-1 AUR-AERX-TTP1-A-1-0 AUR-AF95-TTM1-A-1-1 AUR-AFE4-TTM5-A-1-1 AUR-AFE5-TTM5-A-1-1 AUR-ADCB-TTP1-A-13-0 AUR-AE6X-TTM1-A-1-1 AUR-AER6-TTM1-A-1-1 AUR-AER6-TTP1-A-1-0 AUR-AER8-TTM2-A-1-1 AUR-AF95-TTP1-A-1-0 AUR-AF9A-TTM1-A-1-1 AUR-AFE4-TTM6-A-1-1 AUR-AFE5-TTM6-A-1-1 AUR-AE6X-TTP1-A-1-0 AUR-AER2-TTM1-A-1-1 AUR-AER6-TTM2-A-1-1 AUR-AER8-TTP1-A-1-0 AUR-AERY-TTM1-A-1-1 AUR-AF9A-TTP1-A-1-0 AUR-AFE4-TTP1-A-1-0 AUR-AFE5-TTM7-A-1-1 AUR-AE5G-TTM1-A-1-1 AUR-AER2-TTM3-A-1-1 AUR-AER5-TTM4-A-1-1 AUR-AER6-TTM3-A-1-1 AUR-AER7-TTM1-A-1-1 AUR-AERY-TTP1-A-1-0 AUR-AF98-TTM1-A-1-1 AUR-AFE5-TTM8-A-1-1 AUR-AE5G-TTP1-A-1-1 AUR-AE6Y-TTM1-A-1-1 AUR-AER2-TTP1-A-1-1 AUR-AER5-TTM5-A-1-1 AUR-AER7-TTM2-A-1-1 AUR-AERW-TTM1-A-1-1 AUR-AF98-TTP1-A-1-0 AUR-AFE4-TTM1-A-1-1 AUR-AFE5-TTM10-A-1-1 AUR-AFE5-TTM9-A-1-1 AUR-AE6Y-TTP1-A-1-0 AUR-AER5-TTP2-A-1-1 AUR-AER6-TTM5-A-1-1 AUR-AER7-TTM4-A-1-1 AUR-AERW-TTP1-B-1-0 AUR-AF94-TTM1-A-1-1 AUR-AFE4-TTM2-A-1-1 AUR-AFE5-TTM1-A-1-1 AUR-AFE5-TTP1-A-1-0 AUR-AE5H-TTM1-A-1-1 AUR-AER4-TTM1-A-1-1 AUR-AER5-TTP3-A-1-0 AUR-AER6-TTM6-A-1-1 AUR-AER7-TTP1-A-1-0 AUR-AF94-TTP1-A-1-0 AUR-AF99-TTM1-A-1-1 AUR-AFE4-TTM3-A-1-1 AUR-AFE5-TTM2-A-1-1 AUR-AFE6-TTM1-A-1-1 AUR-AFEA-TTM2-A-1-1 AUR-AFEC-TTM3-A-1-1 AUR-AFKB-TTP1-A-10-0 AUR-AFR2-TTM1-A-1-1 AUR-AFSO-TTP1-A-8-0 AUR-AFUI-TTM1-A-1-0 AUR-AFE6-TTM2-A-1-1 AUR-AFE9-TTM1-A-1-1 AUR-AFEA-TTM3-A-1-1 AUR-AFEC-TTM4-A-1-1 AUR-AFR2-TTP1-A-1-1 AUR-AFR5-TTM1-A-1-1 AUR-AFUI-TTP1-A-1-0 AUR-AG0M-TTM1-A-2-1 AUR-AFE6-TTP1-A-1-0 AUR-AFE9-TTM2-A-1-1 AUR-AFEA-TTM4-A-1-1 AUR-AFEC-TTM5-A-1-1 AUR-AFKD-TTM1-A-1-1 AUR-AFR5-TTP1-A-1-1 AUR-AFSP-TTM1-A-8-0 AUR-AFUM-TTM1-A-1-1 AUR-AG0M-TTP1-A-2-0 AUR-AFE9-TTM3-A-1-1 AUR-AFEA-TTM6-A-1-0 AUR-AFEC-TTM6-A-1-1 AUR-AFKD-TTP1-A-1-1 AUR-AFR3-TTM1-A-1-1 AUR-AFSP-TTP1-A-8-0 AUR-AFUK-TTM1-A-1-0 AUR-AFUM-TTP1-A-1-0 AUR-AFUP-TTM1-A-1-1 AUR-AFE7-TTM1-A-1-1 AUR-AFE9-TTM4-A-1-1 AUR-AFEA-TTP1-A-1-0 AUR-AFEC-TTP1-A-1-0 AUR-AFR3-TTP1-A-2-1 AUR-AFSL-TTM1-A-8-0 AUR-AFUK-TTM2-A-1-0 AUR-AFUP-TTP1-A-1-0 AUR-AG0N-TTM1-A-1-1 AUR-AFE7-TTM2-A-1-1 AUR-AFE9-TTP1-A-1-0 AUR-AFEA-TTP2-A-1-0 AUR-AFEC-TTP2-A-1-1 AUR-AFKF-TTM1-A-1-1 AUR-AFSL-TTP1-A-8-0 AUR-AFUG-TTM1-A-1-1 AUR-AFUK-TTP1-A-1-0 AUR-AFUN-TTM1-A-1-0 AUR-AG0N-TTP1-A-1-0 AUR-AFE7-TTM3-A-1-1 AUR-AFKF-TTP1-A-10-0 AUR-AFR4-TTM1-A-1-1 AUR-AFUN-TTP1-A-1-0 AUR-AG0J-TTM1-A-1-0 AUR-AFE7-TTP2-A-1-1 AUR-AFEA-TTM1-A-1-1 AUR-AFEC-TTM1-A-1-1 AUR-AFKB-TTM1-A-1-1 AUR-AFR4-TTP1-A-1-1 AUR-AFSO-TTM1-A-8-0 AUR-AG0J-TTP1-A-1-0 AUR-AG12-TTM1-A-1-1 AUR-AG12-TTP1-A-1-0 diff --git a/public/brca_aurora_2022/case_lists/cases_methylation.txt b/public/brca_aurora_2022/case_lists/cases_methylation.txt new file mode 100644 index 0000000000..a91bcb020b --- /dev/null +++ b/public/brca_aurora_2022/case_lists/cases_methylation.txt @@ -0,0 +1,6 @@ +cancer_study_identifier: brca_aurora_2022 +stable_id: brca_aurora_2022_methylation +case_list_name: METHYLATION +case_list_description: METHYLATION samples +case_list_category: all_cases_with_methylation_data +case_list_ids: AUR-AD9E-NT1-A-2-1 AUR-AD9E-TTM1-A-2-1 AUR-AD9E-TTM2-A-1-1 AUR-AD9F-TTM1-A-1-1 AUR-AD9F-TTM2-A-2-1 AUR-AD9F-TTM3-A-1-1 AUR-AD9G-NT1-A-1-1 AUR-AD9G-TTM1-A-2-1 AUR-AD9G-TTM2-A-1-1 AUR-AD9G-TTM3-A-1-1 AUR-AD9G-TTP1-B-4-0 AUR-AD9H-TTM1-A-2-1 AUR-AD9H-TTM2-A-1-1 AUR-AD9H-TTM3-A-1-1 AUR-AD9I-NT1-A-1-1 AUR-AD9I-TTM3-A-1-1 AUR-ADCB-TTM1-A-1-1 AUR-ADCB-TTP1-A-13-0 AUR-AE5G-NT1-A-1-1 AUR-AE5G-TTM1-A-1-1 AUR-AE5G-TTP1-A-1-1 AUR-AE5H-TTM1-A-1-1 AUR-AE5H-TTP1-A-1-1 AUR-AE6X-TTM1-A-1-1 AUR-AE6Y-TTM1-A-1-1 AUR-AE6Y-TTP1-A-1-0 AUR-AEPZ-TTM1-A-1-1 AUR-AEPZ-TTP1-A-1-1 AUR-AER2-TTM1-A-1-1 AUR-AER2-TTM3-A-1-1 AUR-AER2-TTP1-A-1-1 AUR-AER4-TTM1-A-1-1 AUR-AER4-TTM2-A-1-1 AUR-AER5-TTM4-A-1-1 AUR-AER5-TTM5-A-1-1 AUR-AER5-TTP2-A-1-1 AUR-AER5-TTP3-A-1-0 AUR-AER6-TTM1-A-1-1 AUR-AER6-TTM10-A-1-1 AUR-AER6-TTM2-A-1-1 AUR-AER6-TTM3-A-1-1 AUR-AER6-TTM5-A-1-1 AUR-AER6-TTM6-A-1-1 AUR-AER6-TTM7-A-1-1 AUR-AER6-TTM9-A-1-1 AUR-AER6-TTP1-A-1-0 AUR-AER7-TTM1-A-1-1 AUR-AER7-TTM2-A-1-1 AUR-AER7-TTM4-A-1-1 AUR-AER8-NT1-A-1-1 AUR-AER8-TTM1-A-1-1 AUR-AER8-TTM2-A-1-1 AUR-AER8-TTP1-A-1-0 AUR-AERW-TTP1-B-1-0 AUR-AERX-TTP1-A-1-0 AUR-AERY-TTM1-A-1-1 AUR-AF94-TTM1-A-1-1 AUR-AF94-TTP1-A-1-0 AUR-AF95-TTM1-A-1-1 AUR-AF95-TTP1-A-1-0 AUR-AF98-TTM1-A-1-1 AUR-AF98-TTP1-A-1-0 AUR-AF99-TTM1-A-1-1 AUR-AF9A-TTM1-A-1-1 AUR-AF9A-TTP1-A-1-0 AUR-AFE4-TTM1-A-1-1 AUR-AFE4-TTM2-A-1-1 AUR-AFE4-TTM3-A-1-1 AUR-AFE4-TTM4-A-1-1 AUR-AFE4-TTM5-A-1-1 AUR-AFE4-TTM6-A-1-1 AUR-AFE5-TTM1-A-1-1 AUR-AFE5-TTM10-A-1-1 AUR-AFE5-TTM2-A-1-1 AUR-AFE5-TTM4-A-1-1 AUR-AFE5-TTM5-A-1-1 AUR-AFE5-TTM6-A-1-1 AUR-AFE5-TTM7-A-1-1 AUR-AFE5-TTM8-A-1-1 AUR-AFE5-TTM9-A-1-1 AUR-AFE5-TTP1-A-1-0 AUR-AFE6-TTM1-A-1-1 AUR-AFE6-TTM2-A-1-1 AUR-AFE7-NT1-A-1-1 AUR-AFE7-TTM1-A-1-1 AUR-AFE7-TTM2-A-1-1 AUR-AFE7-TTM3-A-1-1 AUR-AFE7-TTP2-A-1-1 AUR-AFE9-TTM1-A-1-1 AUR-AFE9-TTM3-A-1-1 AUR-AFE9-TTM4-A-1-1 AUR-AFEA-TTM1-A-1-1 AUR-AFEA-TTM2-A-1-1 AUR-AFEA-TTM3-A-1-1 AUR-AFEA-TTM4-A-1-1 AUR-AFEA-TTM6-A-1-0 AUR-AFEA-TTP2-A-1-0 AUR-AFEC-NT1-A-1-1 AUR-AFEC-TTM1-A-1-1 AUR-AFEC-TTM3-A-1-1 AUR-AFEC-TTM4-A-1-1 AUR-AFEC-TTM6-A-1-1 AUR-AFEC-TTP1-A-1-0 AUR-AFKB-TTM1-A-1-1 AUR-AFKB-TTP1-A-10-0 AUR-AFKD-TTM1-A-1-1 AUR-AFKD-TTP1-A-1-1 AUR-AFKF-TTM1-A-1-1 AUR-AFKF-TTP1-A-10-0 AUR-AFR2-TTM1-A-1-1 AUR-AFR2-TTP1-A-1-1 AUR-AFR3-TTM1-A-1-1 AUR-AFR3-TTP1-A-2-1 AUR-AFR4-TTM1-A-1-1 AUR-AFR5-TTM1-A-1-1 AUR-AFR5-TTP1-A-1-1 AUR-AFSL-TTM1-A-8-0 AUR-AFSL-TTP1-A-8-0 AUR-AFSO-TTM1-A-8-0 AUR-AFSO-TTP1-A-8-0 AUR-AFUG-TTM1-A-1-1 AUR-AFUI-TTM1-A-1-0 AUR-AFUI-TTP1-A-1-0 AUR-AFUK-TTM1-A-1-0 AUR-AFUK-TTM2-A-1-0 AUR-AFUK-TTP1-A-1-0 AUR-AFUL-TTM1-A-1-1 AUR-AFUL-TTP1-A-1-1 AUR-AFUM-TTM1-A-1-1 AUR-AFUN-TTM1-A-1-0 AUR-AFUN-TTP1-A-1-0 AUR-AFUP-TTM1-A-1-1 AUR-AFUP-TTP1-A-1-0 AUR-AG0J-TTM1-A-1-0 AUR-AG0J-TTP1-A-1-0 AUR-AG0M-TTM1-A-2-1 AUR-AG0N-TTM1-A-1-1 AUR-AG0N-TTP1-A-1-0 diff --git a/public/brca_aurora_2019/case_lists/cases_rna_seq_mrna.txt b/public/brca_aurora_2022/case_lists/cases_rna_seq_mrna.txt similarity index 96% rename from public/brca_aurora_2019/case_lists/cases_rna_seq_mrna.txt rename to public/brca_aurora_2022/case_lists/cases_rna_seq_mrna.txt index fb16d97a7f..dc184c0eb3 100644 --- a/public/brca_aurora_2019/case_lists/cases_rna_seq_mrna.txt +++ b/public/brca_aurora_2022/case_lists/cases_rna_seq_mrna.txt @@ -1,5 +1,5 @@ -cancer_study_identifier: brca_aurora_2019 -stable_id: brca_aurora_2019_rna_seq_mrna +cancer_study_identifier: brca_aurora_2022 +stable_id: brca_aurora_2022_rna_seq_mrna case_list_name: Samples with mRNA (log2 transformed z-Scores) data case_list_description: Samples with CNV (log2 transformed z-Scores) data case_list_category: all_cases_with_mrna_rnaseq_data diff --git a/public/brca_aurora_2022/case_lists/cases_samples_all.txt b/public/brca_aurora_2022/case_lists/cases_samples_all.txt new file mode 100644 index 0000000000..dd271cc571 --- /dev/null +++ b/public/brca_aurora_2022/case_lists/cases_samples_all.txt @@ -0,0 +1,6 @@ +cancer_study_identifier: brca_aurora_2022 +stable_id: brca_aurora_2022_all +case_list_name: All samples +case_list_description: All samples +case_list_category: all_cases_in_study +case_list_ids: AUR-AD9E-NT1-A-2-1 AUR-AD9E-TTM1-A-1-1 AUR-AD9E-TTM1-A-2-1 AUR-AD9E-TTM2-A-1-1 AUR-AD9E-TTM4-A-1-1 AUR-AD9F-TTM1-A-1-1 AUR-AD9F-TTM2-A-1-1 AUR-AD9F-TTM2-A-2-1 AUR-AD9F-TTM3-A-1-1 AUR-AD9G-NT1-A-1-1 AUR-AD9G-TTM1-A-1-1 AUR-AD9G-TTM1-A-2-1 AUR-AD9G-TTM2-A-1-1 AUR-AD9G-TTM3-A-1-1 AUR-AD9G-TTP1-B-4-0 AUR-AD9H-TTM1-A-2-1 AUR-AD9H-TTM2-A-1-1 AUR-AD9H-TTM3-A-1-1 AUR-AD9I-NT1-A-1-1 AUR-AD9I-TTM3-A-1-1 AUR-AD9J-TTP1-B-4-0 AUR-ADCB-TTM1-A-1-1 AUR-ADCB-TTP1-A-13-0 AUR-AE5G-NT1-A-1-1 AUR-AE5G-TTM1-A-1-1 AUR-AE5G-TTP1-A-1-1 AUR-AE5H-TTM1-A-1-1 AUR-AE5H-TTP1-A-1-1 AUR-AE6X-TTM1-A-1-1 AUR-AE6X-TTP1-A-1-0 AUR-AE6Y-TTM1-A-1-1 AUR-AE6Y-TTP1-A-1-0 AUR-AEPZ-TTM1-A-1-1 AUR-AEPZ-TTP1-A-1-1 AUR-AER2-TTM1-A-1-1 AUR-AER2-TTM3-A-1-1 AUR-AER2-TTP1-A-1-1 AUR-AER4-TTM1-A-1-1 AUR-AER4-TTM2-A-1-1 AUR-AER4-TTP1-A-1-0 AUR-AER5-TTM4-A-1-1 AUR-AER5-TTM5-A-1-1 AUR-AER5-TTP2-A-1-1 AUR-AER5-TTP3-A-1-0 AUR-AER6-TTM1-A-1-1 AUR-AER6-TTM10-A-1-1 AUR-AER6-TTM2-A-1-1 AUR-AER6-TTM3-A-1-1 AUR-AER6-TTM5-A-1-1 AUR-AER6-TTM6-A-1-1 AUR-AER6-TTM7-A-1-1 AUR-AER6-TTM9-A-1-1 AUR-AER6-TTP1-A-1-0 AUR-AER7-TTM1-A-1-1 AUR-AER7-TTM2-A-1-1 AUR-AER7-TTM4-A-1-1 AUR-AER7-TTP1-A-1-0 AUR-AER8-NT1-A-1-1 AUR-AER8-TTM1-A-1-1 AUR-AER8-TTM2-A-1-1 AUR-AER8-TTP1-A-1-0 AUR-AERW-TTM1-A-1-1 AUR-AERW-TTP1-B-1-0 AUR-AERX-TTM1-A-1-1 AUR-AERX-TTP1-A-1-0 AUR-AERY-TTM1-A-1-1 AUR-AERY-TTP1-A-1-0 AUR-AF94-TTM1-A-1-1 AUR-AF94-TTP1-A-1-0 AUR-AF95-TTM1-A-1-1 AUR-AF95-TTP1-A-1-0 AUR-AF98-TTM1-A-1-1 AUR-AF98-TTP1-A-1-0 AUR-AF99-TTM1-A-1-1 AUR-AF99-TTP1-A-1-0 AUR-AF9A-TTM1-A-1-1 AUR-AF9A-TTP1-A-1-0 AUR-AFE4-TTM1-A-1-1 AUR-AFE4-TTM2-A-1-1 AUR-AFE4-TTM3-A-1-1 AUR-AFE4-TTM4-A-1-1 AUR-AFE4-TTM5-A-1-1 AUR-AFE4-TTM6-A-1-1 AUR-AFE4-TTP1-A-1-0 AUR-AFE5-TTM1-A-1-1 AUR-AFE5-TTM10-A-1-1 AUR-AFE5-TTM2-A-1-1 AUR-AFE5-TTM4-A-1-1 AUR-AFE5-TTM5-A-1-1 AUR-AFE5-TTM6-A-1-1 AUR-AFE5-TTM7-A-1-1 AUR-AFE5-TTM8-A-1-1 AUR-AFE5-TTM9-A-1-1 AUR-AFE5-TTP1-A-1-0 AUR-AFE6-TTM1-A-1-1 AUR-AFE6-TTM2-A-1-1 AUR-AFE6-TTP1-A-1-0 AUR-AFE7-NT1-A-1-1 AUR-AFE7-TTM1-A-1-1 AUR-AFE7-TTM2-A-1-1 AUR-AFE7-TTM3-A-1-1 AUR-AFE7-TTP2-A-1-1 AUR-AFE9-TTM1-A-1-1 AUR-AFE9-TTM2-A-1-1 AUR-AFE9-TTM3-A-1-1 AUR-AFE9-TTM4-A-1-1 AUR-AFE9-TTP1-A-1-0 AUR-AFEA-TTM1-A-1-1 AUR-AFEA-TTM2-A-1-1 AUR-AFEA-TTM3-A-1-1 AUR-AFEA-TTM4-A-1-1 AUR-AFEA-TTM6-A-1-0 AUR-AFEA-TTP1-A-1-0 AUR-AFEA-TTP2-A-1-0 AUR-AFEC-NT1-A-1-1 AUR-AFEC-TTM1-A-1-1 AUR-AFEC-TTM3-A-1-1 AUR-AFEC-TTM4-A-1-1 AUR-AFEC-TTM5-A-1-1 AUR-AFEC-TTM6-A-1-1 AUR-AFEC-TTP1-A-1-0 AUR-AFEC-TTP2-A-1-1 AUR-AFKB-TTM1-A-1-1 AUR-AFKB-TTP1-A-10-0 AUR-AFKD-TTM1-A-1-1 AUR-AFKD-TTP1-A-1-1 AUR-AFKF-TTM1-A-1-1 AUR-AFKF-TTP1-A-10-0 AUR-AFR2-TTM1-A-1-1 AUR-AFR2-TTP1-A-1-1 AUR-AFR3-TTM1-A-1-1 AUR-AFR3-TTP1-A-2-1 AUR-AFR4-TTM1-A-1-1 AUR-AFR4-TTP1-A-1-1 AUR-AFR5-TTM1-A-1-1 AUR-AFR5-TTP1-A-1-1 AUR-AFSL-TTM1-A-8-0 AUR-AFSL-TTP1-A-8-0 AUR-AFSO-TTM1-A-8-0 AUR-AFSO-TTP1-A-8-0 AUR-AFSP-TTM1-A-8-0 AUR-AFSP-TTP1-A-8-0 AUR-AFUG-TTM1-A-1-1 AUR-AFUI-TTM1-A-1-0 AUR-AFUI-TTP1-A-1-0 AUR-AFUK-TTM1-A-1-0 AUR-AFUK-TTM2-A-1-0 AUR-AFUK-TTP1-A-1-0 AUR-AFUL-TTM1-A-1-1 AUR-AFUL-TTP1-A-1-1 AUR-AFUM-TTM1-A-1-1 AUR-AFUM-TTP1-A-1-0 AUR-AFUN-TTM1-A-1-0 AUR-AFUN-TTP1-A-1-0 AUR-AFUO-TTP1-A-1-0 AUR-AFUP-TTM1-A-1-1 AUR-AFUP-TTP1-A-1-0 AUR-AG0J-TTM1-A-1-0 AUR-AG0J-TTP1-A-1-0 AUR-AG0M-TTM1-A-2-1 AUR-AG0M-TTP1-A-2-0 AUR-AG0N-TTM1-A-1-1 AUR-AG0N-TTP1-A-1-0 AUR-AG12-TTM1-A-1-1 AUR-AG12-TTP1-A-1-0 diff --git a/public/brca_aurora_2022/case_lists/mutation_sequenced.txt b/public/brca_aurora_2022/case_lists/mutation_sequenced.txt new file mode 100644 index 0000000000..819327289c --- /dev/null +++ b/public/brca_aurora_2022/case_lists/mutation_sequenced.txt @@ -0,0 +1,6 @@ +cancer_study_identifier: brca_aurora_2022 +stable_id: brca_aurora_2022_sequenced +case_list_name: Mutations +case_list_description: Sample Mutations +case_list_category: all_cases_with_mutation_data +case_list_ids: AUR-AD9E-TTM1-A-1-1 AUR-AD9E-TTM2-A-1-1 AUR-AD9E-TTM4-A-1-1 AUR-AD9G-TTM1-A-1-1 AUR-AD9G-TTM2-A-1-1 AUR-AD9G-TTM3-A-1-1 AUR-AD9G-TTP1-B-4-0 AUR-AD9I-TTM3-A-1-1 AUR-ADCB-TTM1-A-1-1 AUR-ADCB-TTP1-A-13-0 AUR-AE5G-TTM1-A-1-1 AUR-AE5G-TTP1-A-1-1 AUR-AE5H-TTM1-A-1-1 AUR-AE5H-TTP1-A-1-1 AUR-AE6X-TTM1-A-1-1 AUR-AE6X-TTP1-A-1-0 AUR-AE6Y-TTM1-A-1-1 AUR-AE6Y-TTP1-A-1-0 AUR-AEPZ-TTM1-A-1-1 AUR-AEPZ-TTP1-A-1-1 AUR-AER2-TTM1-A-1-1 AUR-AER2-TTM3-A-1-1 AUR-AER2-TTP1-A-1-1 AUR-AER4-TTM1-A-1-1 AUR-AER4-TTM2-A-1-1 AUR-AER4-TTP1-A-1-0 AUR-AER5-TTM4-A-1-1 AUR-AER5-TTM5-A-1-1 AUR-AER5-TTP2-A-1-1 AUR-AER5-TTP3-A-1-0 AUR-AER6-TTM1-A-1-1 AUR-AER6-TTM10-A-1-1 AUR-AER6-TTM2-A-1-1 AUR-AER6-TTM3-A-1-1 AUR-AER6-TTM5-A-1-1 AUR-AER6-TTM6-A-1-1 AUR-AER6-TTM7-A-1-1 AUR-AER6-TTM9-A-1-1 AUR-AER6-TTP1-A-1-0 AUR-AER7-TTM1-A-1-1 AUR-AER7-TTM2-A-1-1 AUR-AER7-TTM4-A-1-1 AUR-AER8-TTM1-A-1-1 AUR-AER8-TTM2-A-1-1 AUR-AER8-TTP1-A-1-0 AUR-AERW-TTM1-A-1-1 AUR-AERW-TTP1-B-1-0 AUR-AERX-TTP1-A-1-0 AUR-AERY-TTM1-A-1-1 AUR-AERY-TTP1-A-1-0 AUR-AF94-TTM1-A-1-1 AUR-AF94-TTP1-A-1-0 AUR-AF95-TTM1-A-1-1 AUR-AF95-TTP1-A-1-0 AUR-AF98-TTM1-A-1-1 AUR-AF98-TTP1-A-1-0 AUR-AF99-TTM1-A-1-1 AUR-AF99-TTP1-A-1-0 AUR-AF9A-TTM1-A-1-1 AUR-AF9A-TTP1-A-1-0 AUR-AFE4-TTM1-A-1-1 AUR-AFE4-TTM2-A-1-1 AUR-AFE4-TTM3-A-1-1 AUR-AFE4-TTM4-A-1-1 AUR-AFE4-TTM5-A-1-1 AUR-AFE4-TTM6-A-1-1 AUR-AFE4-TTP1-A-1-0 AUR-AFE5-TTM1-A-1-1 AUR-AFE5-TTM10-A-1-1 AUR-AFE5-TTM2-A-1-1 AUR-AFE5-TTM4-A-1-1 AUR-AFE5-TTM5-A-1-1 AUR-AFE5-TTM6-A-1-1 AUR-AFE5-TTM7-A-1-1 AUR-AFE5-TTM8-A-1-1 AUR-AFE5-TTM9-A-1-1 AUR-AFE6-TTM1-A-1-1 AUR-AFE6-TTM2-A-1-1 AUR-AFE6-TTP1-A-1-0 AUR-AFE7-TTM1-A-1-1 AUR-AFE7-TTM2-A-1-1 AUR-AFE7-TTM3-A-1-1 AUR-AFE7-TTP2-A-1-1 AUR-AFE9-TTM1-A-1-1 AUR-AFE9-TTM2-A-1-1 AUR-AFE9-TTM3-A-1-1 AUR-AFE9-TTM4-A-1-1 AUR-AFE9-TTP1-A-1-0 AUR-AFEA-TTM1-A-1-1 AUR-AFEA-TTM2-A-1-1 AUR-AFEA-TTM3-A-1-1 AUR-AFEA-TTM4-A-1-1 AUR-AFEA-TTM6-A-1-0 AUR-AFEA-TTP2-A-1-0 AUR-AFEC-TTM1-A-1-1 AUR-AFEC-TTM3-A-1-1 AUR-AFEC-TTM4-A-1-1 AUR-AFEC-TTM5-A-1-1 AUR-AFEC-TTM6-A-1-1 AUR-AFEC-TTP1-A-1-0 AUR-AFKB-TTM1-A-1-1 AUR-AFKB-TTP1-A-10-0 AUR-AFKD-TTM1-A-1-1 AUR-AFKD-TTP1-A-1-1 AUR-AFKF-TTM1-A-1-1 AUR-AFKF-TTP1-A-10-0 AUR-AFR2-TTM1-A-1-1 AUR-AFR2-TTP1-A-1-1 AUR-AFR3-TTM1-A-1-1 AUR-AFR3-TTP1-A-2-1 AUR-AFR4-TTM1-A-1-1 AUR-AFR4-TTP1-A-1-1 AUR-AFR5-TTM1-A-1-1 AUR-AFR5-TTP1-A-1-1 AUR-AFSL-TTM1-A-8-0 AUR-AFSL-TTP1-A-8-0 AUR-AFSO-TTM1-A-8-0 AUR-AFUG-TTM1-A-1-1 AUR-AFUI-TTM1-A-1-0 AUR-AFUI-TTP1-A-1-0 AUR-AFUK-TTM1-A-1-0 AUR-AFUK-TTM2-A-1-0 AUR-AFUM-TTM1-A-1-1 AUR-AFUM-TTP1-A-1-0 AUR-AFUN-TTM1-A-1-0 AUR-AFUN-TTP1-A-1-0 AUR-AFUP-TTM1-A-1-1 AUR-AFUP-TTP1-A-1-0 AUR-AG0J-TTM1-A-1-0 AUR-AG0J-TTP1-A-1-0 AUR-AG0M-TTM1-A-2-1 AUR-AG0N-TTM1-A-1-1 AUR-AG12-TTM1-A-1-1 AUR-AG12-TTP1-A-1-0 diff --git a/public/brca_aurora_2022/data_chemo.txt b/public/brca_aurora_2022/data_chemo.txt new file mode 100644 index 0000000000..1244ec3fd8 --- /dev/null +++ b/public/brca_aurora_2022/data_chemo.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:93becff5bf13102b7f993409219401f3db807e22f9197eca26ad28a66025d270 +size 2111 diff --git a/public/brca_aurora_2022/data_clinical_patient.txt b/public/brca_aurora_2022/data_clinical_patient.txt new file mode 100644 index 0000000000..ce88ba2ad6 --- /dev/null +++ b/public/brca_aurora_2022/data_clinical_patient.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e8238fe47201635172012995ea1621019506d3ab112435c7b0dd586c9c037b56 +size 18726 diff --git a/public/brca_aurora_2022/data_clinical_sample.txt b/public/brca_aurora_2022/data_clinical_sample.txt new file mode 100644 index 0000000000..bd94895261 --- /dev/null +++ b/public/brca_aurora_2022/data_clinical_sample.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eb93b508f16291ce9df6cea9fcb40a79feaa51555c2acc93b3e3c5e6d0da9b17 +size 23985 diff --git a/public/brca_aurora_2022/data_cna_hg38.seg b/public/brca_aurora_2022/data_cna_hg38.seg new file mode 100644 index 0000000000..fc6d589225 --- /dev/null +++ b/public/brca_aurora_2022/data_cna_hg38.seg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:42412ca966830828e3471b3fa873f9bbc4f09bafd396a9530fdef3eb839ab779 +size 6189727 diff --git a/public/brca_aurora_2022/data_log2_cna.txt b/public/brca_aurora_2022/data_log2_cna.txt new file mode 100644 index 0000000000..e4de5bafd2 --- /dev/null +++ b/public/brca_aurora_2022/data_log2_cna.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b649a2840c7cf5f54a44e9714183b08379af488941fa9a2b09044c936845caa8 +size 56501630 diff --git a/public/brca_aurora_2022/data_methylation_hm450.txt b/public/brca_aurora_2022/data_methylation_hm450.txt new file mode 100644 index 0000000000..0326e6b628 --- /dev/null +++ b/public/brca_aurora_2022/data_methylation_hm450.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6072c32808f315eaa4ca86fd3daa2328ac46a6848042bd3e9f2a9e9554a6f913 +size 1819065214 diff --git a/public/brca_aurora_2022/data_metsdx.txt b/public/brca_aurora_2022/data_metsdx.txt new file mode 100644 index 0000000000..a48751e4d5 --- /dev/null +++ b/public/brca_aurora_2022/data_metsdx.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4feb2d2b22bb3c95ef6877fa16b78ac03f30d04b7e521d561d805bbfa7531464 +size 2098 diff --git a/public/brca_aurora_2019/data_mrna_seq_rsem_zscores_ref_all_samples.txt b/public/brca_aurora_2022/data_mrna_seq_rsem_zscores_ref_all_samples.txt similarity index 100% rename from public/brca_aurora_2019/data_mrna_seq_rsem_zscores_ref_all_samples.txt rename to public/brca_aurora_2022/data_mrna_seq_rsem_zscores_ref_all_samples.txt diff --git a/public/brca_aurora_2022/data_mutations.txt b/public/brca_aurora_2022/data_mutations.txt new file mode 100644 index 0000000000..37dffb830c --- /dev/null +++ b/public/brca_aurora_2022/data_mutations.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:98607c6b4564914c06581b14ecae025b99988e3633d6561fa78bca2cf0eef3a6 +size 9961086 diff --git a/public/brca_aurora_2022/data_resource_definition.txt b/public/brca_aurora_2022/data_resource_definition.txt new file mode 100644 index 0000000000..27f7c9b579 --- /dev/null +++ b/public/brca_aurora_2022/data_resource_definition.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:faf745b0721345513b4833edbf3822ef1033fb82c09e16f08d48616cba1d5f3e +size 159 diff --git a/public/brca_aurora_2022/data_resources_samples.txt b/public/brca_aurora_2022/data_resources_samples.txt new file mode 100644 index 0000000000..ad4967c5e1 --- /dev/null +++ b/public/brca_aurora_2022/data_resources_samples.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fe94d72d6f450b7cd437721eb93e88765e5e4089bb6691292b86a0b015c0dc89 +size 27262 diff --git a/public/brca_aurora_2022/data_surgery.txt b/public/brca_aurora_2022/data_surgery.txt new file mode 100644 index 0000000000..9ab69efe89 --- /dev/null +++ b/public/brca_aurora_2022/data_surgery.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1d1ffa2ec5efd44d37111db037ddfddd2759169dc21de3adc6afa1b4623dc98d +size 1368 diff --git a/public/brca_aurora_2022/meta_chemo.txt b/public/brca_aurora_2022/meta_chemo.txt new file mode 100644 index 0000000000..7adeec902b --- /dev/null +++ b/public/brca_aurora_2022/meta_chemo.txt @@ -0,0 +1,4 @@ +cancer_study_identifier: brca_aurora_us +genetic_alteration_type: CLINICAL +datatype: TIMELINE +data_filename: data_chemo.txt diff --git a/public/brca_aurora_2022/meta_clinical_patient.txt b/public/brca_aurora_2022/meta_clinical_patient.txt new file mode 100644 index 0000000000..b8de00d6b3 --- /dev/null +++ b/public/brca_aurora_2022/meta_clinical_patient.txt @@ -0,0 +1,4 @@ +cancer_study_identifier: brca_aurora_2022 +genetic_alteration_type: CLINICAL +datatype: PATIENT_ATTRIBUTES +data_filename: data_clinical_patient.txt diff --git a/public/brca_aurora_2022/meta_clinical_sample.txt b/public/brca_aurora_2022/meta_clinical_sample.txt new file mode 100644 index 0000000000..b204a0f2ec --- /dev/null +++ b/public/brca_aurora_2022/meta_clinical_sample.txt @@ -0,0 +1,4 @@ +cancer_study_identifier: brca_aurora_2022 +genetic_alteration_type: CLINICAL +datatype: SAMPLE_ATTRIBUTES +data_filename: data_clinical_sample.txt diff --git a/public/brca_aurora_2022/meta_cna_hg38_seg.txt b/public/brca_aurora_2022/meta_cna_hg38_seg.txt new file mode 100644 index 0000000000..a2414caf2a --- /dev/null +++ b/public/brca_aurora_2022/meta_cna_hg38_seg.txt @@ -0,0 +1,6 @@ +cancer_study_identifier: brca_aurora_2022 +genetic_alteration_type: COPY_NUMBER_ALTERATION +datatype: SEG +reference_genome_id: hg38 +description: Segment data for the aurora cancer study +data_filename: data_cna_hg38.seg diff --git a/public/brca_aurora_2022/meta_log2_cna.txt b/public/brca_aurora_2022/meta_log2_cna.txt new file mode 100644 index 0000000000..ba952a93a2 --- /dev/null +++ b/public/brca_aurora_2022/meta_log2_cna.txt @@ -0,0 +1,8 @@ +cancer_study_identifier: brca_aurora_2022 +genetic_alteration_type: COPY_NUMBER_ALTERATION +datatype: LOG2-VALUE +stable_id: log2CNA +show_profile_in_analysis_tab: false +profile_description: Log2 copy-number values for each gene +profile_name: Log2 copy-number values +data_filename: data_log2_cna.txt diff --git a/public/brca_aurora_2022/meta_methylation_hm450.txt b/public/brca_aurora_2022/meta_methylation_hm450.txt new file mode 100644 index 0000000000..b19f740e36 --- /dev/null +++ b/public/brca_aurora_2022/meta_methylation_hm450.txt @@ -0,0 +1,8 @@ +cancer_study_identifier: brca_aurora_2022 +genetic_alteration_type: METHYLATION +datatype: CONTINUOUS +stable_id: methylation_hm450 +show_profile_in_analysis_tab: false +profile_name: Methylation (EPIC) +profile_description: Methylation beta-values +data_filename: data_methylation_hm450.txt diff --git a/public/brca_aurora_2022/meta_metsdx.txt b/public/brca_aurora_2022/meta_metsdx.txt new file mode 100644 index 0000000000..042505750a --- /dev/null +++ b/public/brca_aurora_2022/meta_metsdx.txt @@ -0,0 +1,4 @@ +cancer_study_identifier: brca_aurora_us +genetic_alteration_type: CLINICAL +datatype: TIMELINE +data_filename: data_metsdx.txt diff --git a/public/brca_aurora_2019/meta_mrna_seq_rsem_zscores_ref_all_samples.txt b/public/brca_aurora_2022/meta_mrna_seq_rsem_zscores_ref_all_samples.txt similarity index 88% rename from public/brca_aurora_2019/meta_mrna_seq_rsem_zscores_ref_all_samples.txt rename to public/brca_aurora_2022/meta_mrna_seq_rsem_zscores_ref_all_samples.txt index 89144ff43e..292da6f95c 100644 --- a/public/brca_aurora_2019/meta_mrna_seq_rsem_zscores_ref_all_samples.txt +++ b/public/brca_aurora_2022/meta_mrna_seq_rsem_zscores_ref_all_samples.txt @@ -1,4 +1,4 @@ -cancer_study_identifier: brca_aurora_2019 +cancer_study_identifier: brca_aurora_2022 genetic_alteration_type: MRNA_EXPRESSION datatype: Z-SCORE stable_id: rna_seq_mrna_median_Zscores diff --git a/public/brca_aurora_2022/meta_mutations.txt b/public/brca_aurora_2022/meta_mutations.txt new file mode 100644 index 0000000000..dede2384a0 --- /dev/null +++ b/public/brca_aurora_2022/meta_mutations.txt @@ -0,0 +1,9 @@ +cancer_study_identifier: brca_aurora_2022 +genetic_alteration_type: MUTATION_EXTENDED +datatype: MAF +stable_id: mutations +show_profile_in_analysis_tab: true +profile_description: Mutation data from whole exome sequencing. +profile_name: Mutations +swissprot_identifier: accession +data_filename: data_mutations.txt diff --git a/public/brca_aurora_2022/meta_resource_definition.txt b/public/brca_aurora_2022/meta_resource_definition.txt new file mode 100644 index 0000000000..3cac01315d --- /dev/null +++ b/public/brca_aurora_2022/meta_resource_definition.txt @@ -0,0 +1,3 @@ +cancer_study_identifier: brca_aurora_us +resource_type: DEFINITION +data_filename: data_resource_definition.txt \ No newline at end of file diff --git a/public/brca_aurora_2022/meta_resource_sample.txt b/public/brca_aurora_2022/meta_resource_sample.txt new file mode 100644 index 0000000000..ec8e2fa0d8 --- /dev/null +++ b/public/brca_aurora_2022/meta_resource_sample.txt @@ -0,0 +1,3 @@ +cancer_study_identifier: brca_aurora_2022 +resource_type: SAMPLE +data_filename: data_resources_samples.txt diff --git a/public/brca_aurora_2022/meta_study.txt b/public/brca_aurora_2022/meta_study.txt new file mode 100644 index 0000000000..edde27401f --- /dev/null +++ b/public/brca_aurora_2022/meta_study.txt @@ -0,0 +1,7 @@ +type_of_cancer: brca +cancer_study_identifier: brca_aurora_2022 +name: Aurora-US Metastatic Breast Cancer +description: Retrospective Tissue Collection; an initiative of the Breast Cancer Research Foundation +groups: PUBLIC +reference_genome: hg38 +add_global_case_list: false diff --git a/public/brca_aurora_2022/meta_surgery.txt b/public/brca_aurora_2022/meta_surgery.txt new file mode 100644 index 0000000000..122e3f1382 --- /dev/null +++ b/public/brca_aurora_2022/meta_surgery.txt @@ -0,0 +1,4 @@ +cancer_study_identifier: brca_aurora_us +genetic_alteration_type: CLINICAL +datatype: TIMELINE +data_filename: data_surgery.txt From b64e0ae1d86907a5dffea345f94a8a4ca3fdf8cd Mon Sep 17 00:00:00 2001 From: rahil19 Date: Wed, 15 Mar 2023 10:05:00 -0400 Subject: [PATCH 3/3] Updated clinical_patient(months2days), cna files (to only contain 135 sm), methylation files (to only contain 131 sm, annotation), mutation (extensive annotation cBIO format) --- public/brca_aurora_2022/case_lists/cases_cna.txt | 2 +- public/brca_aurora_2022/case_lists/cases_methylation.txt | 2 +- public/brca_aurora_2022/case_lists/cases_samples_all.txt | 2 +- public/brca_aurora_2022/data_clinical_patient.txt | 4 ++-- public/brca_aurora_2022/data_cna_hg38.seg | 4 ++-- public/brca_aurora_2022/data_log2_cna.txt | 4 ++-- public/brca_aurora_2022/data_methylation_hm450.txt | 4 ++-- public/brca_aurora_2022/data_mutations.txt | 4 ++-- 8 files changed, 13 insertions(+), 13 deletions(-) diff --git a/public/brca_aurora_2022/case_lists/cases_cna.txt b/public/brca_aurora_2022/case_lists/cases_cna.txt index ff98b40046..448c83f429 100644 --- a/public/brca_aurora_2022/case_lists/cases_cna.txt +++ b/public/brca_aurora_2022/case_lists/cases_cna.txt @@ -3,4 +3,4 @@ stable_id: brca_aurora_2022_cna case_list_name: CNA case_list_description: CNA samples case_list_category: all_cases_with_cna_data -case_list_ids: AUR-AE5H-TTP1-A-1-1 AUR-AEPZ-TTM1-A-1-1 AUR-AER4-TTM2-A-1-1 AUR-AER6-TTM7-A-1-1 AUR-AERX-TTM1-A-1-1 AUR-AF99-TTP1-A-1-0 AUR-AFE4-TTM4-A-1-1 AUR-AFE5-TTM4-A-1-1 AUR-ADCB-TTM1-A-1-1 AUR-AEPZ-TTP1-A-1-1 AUR-AER4-TTP1-A-1-0 AUR-AER6-TTM10-A-1-1 AUR-AER6-TTM9-A-1-1 AUR-AER8-TTM1-A-1-1 AUR-AERX-TTP1-A-1-0 AUR-AF95-TTM1-A-1-1 AUR-AFE4-TTM5-A-1-1 AUR-AFE5-TTM5-A-1-1 AUR-ADCB-TTP1-A-13-0 AUR-AE6X-TTM1-A-1-1 AUR-AER6-TTM1-A-1-1 AUR-AER6-TTP1-A-1-0 AUR-AER8-TTM2-A-1-1 AUR-AF95-TTP1-A-1-0 AUR-AF9A-TTM1-A-1-1 AUR-AFE4-TTM6-A-1-1 AUR-AFE5-TTM6-A-1-1 AUR-AE6X-TTP1-A-1-0 AUR-AER2-TTM1-A-1-1 AUR-AER6-TTM2-A-1-1 AUR-AER8-TTP1-A-1-0 AUR-AERY-TTM1-A-1-1 AUR-AF9A-TTP1-A-1-0 AUR-AFE4-TTP1-A-1-0 AUR-AFE5-TTM7-A-1-1 AUR-AE5G-TTM1-A-1-1 AUR-AER2-TTM3-A-1-1 AUR-AER5-TTM4-A-1-1 AUR-AER6-TTM3-A-1-1 AUR-AER7-TTM1-A-1-1 AUR-AERY-TTP1-A-1-0 AUR-AF98-TTM1-A-1-1 AUR-AFE5-TTM8-A-1-1 AUR-AE5G-TTP1-A-1-1 AUR-AE6Y-TTM1-A-1-1 AUR-AER2-TTP1-A-1-1 AUR-AER5-TTM5-A-1-1 AUR-AER7-TTM2-A-1-1 AUR-AERW-TTM1-A-1-1 AUR-AF98-TTP1-A-1-0 AUR-AFE4-TTM1-A-1-1 AUR-AFE5-TTM10-A-1-1 AUR-AFE5-TTM9-A-1-1 AUR-AE6Y-TTP1-A-1-0 AUR-AER5-TTP2-A-1-1 AUR-AER6-TTM5-A-1-1 AUR-AER7-TTM4-A-1-1 AUR-AERW-TTP1-B-1-0 AUR-AF94-TTM1-A-1-1 AUR-AFE4-TTM2-A-1-1 AUR-AFE5-TTM1-A-1-1 AUR-AFE5-TTP1-A-1-0 AUR-AE5H-TTM1-A-1-1 AUR-AER4-TTM1-A-1-1 AUR-AER5-TTP3-A-1-0 AUR-AER6-TTM6-A-1-1 AUR-AER7-TTP1-A-1-0 AUR-AF94-TTP1-A-1-0 AUR-AF99-TTM1-A-1-1 AUR-AFE4-TTM3-A-1-1 AUR-AFE5-TTM2-A-1-1 AUR-AFE6-TTM1-A-1-1 AUR-AFEA-TTM2-A-1-1 AUR-AFEC-TTM3-A-1-1 AUR-AFKB-TTP1-A-10-0 AUR-AFR2-TTM1-A-1-1 AUR-AFSO-TTP1-A-8-0 AUR-AFUI-TTM1-A-1-0 AUR-AFE6-TTM2-A-1-1 AUR-AFE9-TTM1-A-1-1 AUR-AFEA-TTM3-A-1-1 AUR-AFEC-TTM4-A-1-1 AUR-AFR2-TTP1-A-1-1 AUR-AFR5-TTM1-A-1-1 AUR-AFUI-TTP1-A-1-0 AUR-AG0M-TTM1-A-2-1 AUR-AFE6-TTP1-A-1-0 AUR-AFE9-TTM2-A-1-1 AUR-AFEA-TTM4-A-1-1 AUR-AFEC-TTM5-A-1-1 AUR-AFKD-TTM1-A-1-1 AUR-AFR5-TTP1-A-1-1 AUR-AFSP-TTM1-A-8-0 AUR-AFUM-TTM1-A-1-1 AUR-AG0M-TTP1-A-2-0 AUR-AFE9-TTM3-A-1-1 AUR-AFEA-TTM6-A-1-0 AUR-AFEC-TTM6-A-1-1 AUR-AFKD-TTP1-A-1-1 AUR-AFR3-TTM1-A-1-1 AUR-AFSP-TTP1-A-8-0 AUR-AFUK-TTM1-A-1-0 AUR-AFUM-TTP1-A-1-0 AUR-AFUP-TTM1-A-1-1 AUR-AFE7-TTM1-A-1-1 AUR-AFE9-TTM4-A-1-1 AUR-AFEA-TTP1-A-1-0 AUR-AFEC-TTP1-A-1-0 AUR-AFR3-TTP1-A-2-1 AUR-AFSL-TTM1-A-8-0 AUR-AFUK-TTM2-A-1-0 AUR-AFUP-TTP1-A-1-0 AUR-AG0N-TTM1-A-1-1 AUR-AFE7-TTM2-A-1-1 AUR-AFE9-TTP1-A-1-0 AUR-AFEA-TTP2-A-1-0 AUR-AFEC-TTP2-A-1-1 AUR-AFKF-TTM1-A-1-1 AUR-AFSL-TTP1-A-8-0 AUR-AFUG-TTM1-A-1-1 AUR-AFUK-TTP1-A-1-0 AUR-AFUN-TTM1-A-1-0 AUR-AG0N-TTP1-A-1-0 AUR-AFE7-TTM3-A-1-1 AUR-AFKF-TTP1-A-10-0 AUR-AFR4-TTM1-A-1-1 AUR-AFUN-TTP1-A-1-0 AUR-AG0J-TTM1-A-1-0 AUR-AFE7-TTP2-A-1-1 AUR-AFEA-TTM1-A-1-1 AUR-AFEC-TTM1-A-1-1 AUR-AFKB-TTM1-A-1-1 AUR-AFR4-TTP1-A-1-1 AUR-AFSO-TTM1-A-8-0 AUR-AG0J-TTP1-A-1-0 AUR-AG12-TTM1-A-1-1 AUR-AG12-TTP1-A-1-0 +case_list_ids: AUR-AE5H-TTP1-A-1-1 AUR-AEPZ-TTM1-A-1-1 AUR-AER4-TTM2-A-1-1 AUR-AER6-TTM7-A-1-1 AUR-AERX-TTM1-A-1-1 AUR-AF99-TTP1-A-1-0 AUR-AFE4-TTM4-A-1-1 AUR-AFE5-TTM4-A-1-1 AUR-ADCB-TTM1-A-1-1 AUR-AEPZ-TTP1-A-1-1 AUR-AER4-TTP1-A-1-0 AUR-AER6-TTM10-A-1-1 AUR-AER6-TTM9-A-1-1 AUR-AER8-TTM1-A-1-1 AUR-AERX-TTP1-A-1-0 AUR-AF95-TTM1-A-1-1 AUR-AFE4-TTM5-A-1-1 AUR-AFE5-TTM5-A-1-1 AUR-ADCB-TTP1-A-13-0 AUR-AE6X-TTM1-A-1-1 AUR-AER6-TTM1-A-1-1 AUR-AER6-TTP1-A-1-0 AUR-AER8-TTM2-A-1-1 AUR-AF95-TTP1-A-1-0 AUR-AF9A-TTM1-A-1-1 AUR-AFE4-TTM6-A-1-1 AUR-AFE5-TTM6-A-1-1 AUR-AE6X-TTP1-A-1-0 AUR-AER2-TTM1-A-1-1 AUR-AER6-TTM2-A-1-1 AUR-AER8-TTP1-A-1-0 AUR-AERY-TTM1-A-1-1 AUR-AF9A-TTP1-A-1-0 AUR-AFE4-TTP1-A-1-0 AUR-AFE5-TTM7-A-1-1 AUR-AE5G-TTM1-A-1-1 AUR-AER2-TTM3-A-1-1 AUR-AER5-TTM4-A-1-1 AUR-AER6-TTM3-A-1-1 AUR-AER7-TTM1-A-1-1 AUR-AERY-TTP1-A-1-0 AUR-AF98-TTM1-A-1-1 AUR-AFE5-TTM8-A-1-1 AUR-AE5G-TTP1-A-1-1 AUR-AE6Y-TTM1-A-1-1 AUR-AER2-TTP1-A-1-1 AUR-AER5-TTM5-A-1-1 AUR-AER7-TTM2-A-1-1 AUR-AERW-TTM1-A-1-1 AUR-AF98-TTP1-A-1-0 AUR-AFE4-TTM1-A-1-1 AUR-AFE5-TTM10-A-1-1 AUR-AFE5-TTM9-A-1-1 AUR-AE6Y-TTP1-A-1-0 AUR-AER5-TTP2-A-1-1 AUR-AER6-TTM5-A-1-1 AUR-AER7-TTM4-A-1-1 AUR-AERW-TTP1-B-1-0 AUR-AF94-TTM1-A-1-1 AUR-AFE4-TTM2-A-1-1 AUR-AFE5-TTM1-A-1-1 AUR-AFE5-TTP1-A-1-0 AUR-AE5H-TTM1-A-1-1 AUR-AER4-TTM1-A-1-1 AUR-AER5-TTP3-A-1-0 AUR-AER6-TTM6-A-1-1 AUR-AER7-TTP1-A-1-0 AUR-AF94-TTP1-A-1-0 AUR-AF99-TTM1-A-1-1 AUR-AFE4-TTM3-A-1-1 AUR-AFE5-TTM2-A-1-1 AUR-AFE6-TTM1-A-1-1 AUR-AFEA-TTM2-A-1-1 AUR-AFEC-TTM3-A-1-1 AUR-AFKB-TTP1-A-10-0 AUR-AFR2-TTM1-A-1-1 AUR-AFSO-TTP1-A-8-0 AUR-AFUI-TTM1-A-1-0 AUR-AFE6-TTM2-A-1-1 AUR-AFE9-TTM1-A-1-1 AUR-AFEA-TTM3-A-1-1 AUR-AFEC-TTM4-A-1-1 AUR-AFR2-TTP1-A-1-1 AUR-AFR5-TTM1-A-1-1 AUR-AFUI-TTP1-A-1-0 AUR-AG0M-TTM1-A-2-1 AUR-AFE6-TTP1-A-1-0 AUR-AFE9-TTM2-A-1-1 AUR-AFEA-TTM4-A-1-1 AUR-AFEC-TTM5-A-1-1 AUR-AFKD-TTM1-A-1-1 AUR-AFR5-TTP1-A-1-1 AUR-AFSP-TTM1-A-8-0 AUR-AFUM-TTM1-A-1-1 AUR-AG0M-TTP1-A-2-0 AUR-AFE9-TTM3-A-1-1 AUR-AFEA-TTM6-A-1-0 AUR-AFEC-TTM6-A-1-1 AUR-AFKD-TTP1-A-1-1 AUR-AFR3-TTM1-A-1-1 AUR-AFSP-TTP1-A-8-0 AUR-AFUK-TTM1-A-1-0 AUR-AFUM-TTP1-A-1-0 AUR-AFUP-TTM1-A-1-1 AUR-AFE7-TTM1-A-1-1 AUR-AFE9-TTM4-A-1-1 AUR-AFEA-TTP1-A-1-0 AUR-AFEC-TTP1-A-1-0 AUR-AFR3-TTP1-A-2-1 AUR-AFSL-TTM1-A-8-0 AUR-AFUK-TTM2-A-1-0 AUR-AFUP-TTP1-A-1-0 AUR-AG0N-TTM1-A-1-1 AUR-AFE7-TTM2-A-1-1 AUR-AFE9-TTP1-A-1-0 AUR-AFKF-TTM1-A-1-1 AUR-AFSL-TTP1-A-8-0 AUR-AFUG-TTM1-A-1-1 AUR-AFUK-TTP1-A-1-0 AUR-AFUN-TTM1-A-1-0 AUR-AG0N-TTP1-A-1-0 AUR-AFE7-TTM3-A-1-1 AUR-AFKF-TTP1-A-10-0 AUR-AFR4-TTM1-A-1-1 AUR-AFUN-TTP1-A-1-0 AUR-AG0J-TTM1-A-1-0 AUR-AFE7-TTP2-A-1-1 AUR-AFEA-TTM1-A-1-1 AUR-AFEC-TTM1-A-1-1 AUR-AFKB-TTM1-A-1-1 AUR-AFR4-TTP1-A-1-1 AUR-AFSO-TTM1-A-8-0 AUR-AG0J-TTP1-A-1-0 AUR-AG12-TTM1-A-1-1 AUR-AG12-TTP1-A-1-0 diff --git a/public/brca_aurora_2022/case_lists/cases_methylation.txt b/public/brca_aurora_2022/case_lists/cases_methylation.txt index a91bcb020b..7f42b07197 100644 --- a/public/brca_aurora_2022/case_lists/cases_methylation.txt +++ b/public/brca_aurora_2022/case_lists/cases_methylation.txt @@ -3,4 +3,4 @@ stable_id: brca_aurora_2022_methylation case_list_name: METHYLATION case_list_description: METHYLATION samples case_list_category: all_cases_with_methylation_data -case_list_ids: AUR-AD9E-NT1-A-2-1 AUR-AD9E-TTM1-A-2-1 AUR-AD9E-TTM2-A-1-1 AUR-AD9F-TTM1-A-1-1 AUR-AD9F-TTM2-A-2-1 AUR-AD9F-TTM3-A-1-1 AUR-AD9G-NT1-A-1-1 AUR-AD9G-TTM1-A-2-1 AUR-AD9G-TTM2-A-1-1 AUR-AD9G-TTM3-A-1-1 AUR-AD9G-TTP1-B-4-0 AUR-AD9H-TTM1-A-2-1 AUR-AD9H-TTM2-A-1-1 AUR-AD9H-TTM3-A-1-1 AUR-AD9I-NT1-A-1-1 AUR-AD9I-TTM3-A-1-1 AUR-ADCB-TTM1-A-1-1 AUR-ADCB-TTP1-A-13-0 AUR-AE5G-NT1-A-1-1 AUR-AE5G-TTM1-A-1-1 AUR-AE5G-TTP1-A-1-1 AUR-AE5H-TTM1-A-1-1 AUR-AE5H-TTP1-A-1-1 AUR-AE6X-TTM1-A-1-1 AUR-AE6Y-TTM1-A-1-1 AUR-AE6Y-TTP1-A-1-0 AUR-AEPZ-TTM1-A-1-1 AUR-AEPZ-TTP1-A-1-1 AUR-AER2-TTM1-A-1-1 AUR-AER2-TTM3-A-1-1 AUR-AER2-TTP1-A-1-1 AUR-AER4-TTM1-A-1-1 AUR-AER4-TTM2-A-1-1 AUR-AER5-TTM4-A-1-1 AUR-AER5-TTM5-A-1-1 AUR-AER5-TTP2-A-1-1 AUR-AER5-TTP3-A-1-0 AUR-AER6-TTM1-A-1-1 AUR-AER6-TTM10-A-1-1 AUR-AER6-TTM2-A-1-1 AUR-AER6-TTM3-A-1-1 AUR-AER6-TTM5-A-1-1 AUR-AER6-TTM6-A-1-1 AUR-AER6-TTM7-A-1-1 AUR-AER6-TTM9-A-1-1 AUR-AER6-TTP1-A-1-0 AUR-AER7-TTM1-A-1-1 AUR-AER7-TTM2-A-1-1 AUR-AER7-TTM4-A-1-1 AUR-AER8-NT1-A-1-1 AUR-AER8-TTM1-A-1-1 AUR-AER8-TTM2-A-1-1 AUR-AER8-TTP1-A-1-0 AUR-AERW-TTP1-B-1-0 AUR-AERX-TTP1-A-1-0 AUR-AERY-TTM1-A-1-1 AUR-AF94-TTM1-A-1-1 AUR-AF94-TTP1-A-1-0 AUR-AF95-TTM1-A-1-1 AUR-AF95-TTP1-A-1-0 AUR-AF98-TTM1-A-1-1 AUR-AF98-TTP1-A-1-0 AUR-AF99-TTM1-A-1-1 AUR-AF9A-TTM1-A-1-1 AUR-AF9A-TTP1-A-1-0 AUR-AFE4-TTM1-A-1-1 AUR-AFE4-TTM2-A-1-1 AUR-AFE4-TTM3-A-1-1 AUR-AFE4-TTM4-A-1-1 AUR-AFE4-TTM5-A-1-1 AUR-AFE4-TTM6-A-1-1 AUR-AFE5-TTM1-A-1-1 AUR-AFE5-TTM10-A-1-1 AUR-AFE5-TTM2-A-1-1 AUR-AFE5-TTM4-A-1-1 AUR-AFE5-TTM5-A-1-1 AUR-AFE5-TTM6-A-1-1 AUR-AFE5-TTM7-A-1-1 AUR-AFE5-TTM8-A-1-1 AUR-AFE5-TTM9-A-1-1 AUR-AFE5-TTP1-A-1-0 AUR-AFE6-TTM1-A-1-1 AUR-AFE6-TTM2-A-1-1 AUR-AFE7-NT1-A-1-1 AUR-AFE7-TTM1-A-1-1 AUR-AFE7-TTM2-A-1-1 AUR-AFE7-TTM3-A-1-1 AUR-AFE7-TTP2-A-1-1 AUR-AFE9-TTM1-A-1-1 AUR-AFE9-TTM3-A-1-1 AUR-AFE9-TTM4-A-1-1 AUR-AFEA-TTM1-A-1-1 AUR-AFEA-TTM2-A-1-1 AUR-AFEA-TTM3-A-1-1 AUR-AFEA-TTM4-A-1-1 AUR-AFEA-TTM6-A-1-0 AUR-AFEA-TTP2-A-1-0 AUR-AFEC-NT1-A-1-1 AUR-AFEC-TTM1-A-1-1 AUR-AFEC-TTM3-A-1-1 AUR-AFEC-TTM4-A-1-1 AUR-AFEC-TTM6-A-1-1 AUR-AFEC-TTP1-A-1-0 AUR-AFKB-TTM1-A-1-1 AUR-AFKB-TTP1-A-10-0 AUR-AFKD-TTM1-A-1-1 AUR-AFKD-TTP1-A-1-1 AUR-AFKF-TTM1-A-1-1 AUR-AFKF-TTP1-A-10-0 AUR-AFR2-TTM1-A-1-1 AUR-AFR2-TTP1-A-1-1 AUR-AFR3-TTM1-A-1-1 AUR-AFR3-TTP1-A-2-1 AUR-AFR4-TTM1-A-1-1 AUR-AFR5-TTM1-A-1-1 AUR-AFR5-TTP1-A-1-1 AUR-AFSL-TTM1-A-8-0 AUR-AFSL-TTP1-A-8-0 AUR-AFSO-TTM1-A-8-0 AUR-AFSO-TTP1-A-8-0 AUR-AFUG-TTM1-A-1-1 AUR-AFUI-TTM1-A-1-0 AUR-AFUI-TTP1-A-1-0 AUR-AFUK-TTM1-A-1-0 AUR-AFUK-TTM2-A-1-0 AUR-AFUK-TTP1-A-1-0 AUR-AFUL-TTM1-A-1-1 AUR-AFUL-TTP1-A-1-1 AUR-AFUM-TTM1-A-1-1 AUR-AFUN-TTM1-A-1-0 AUR-AFUN-TTP1-A-1-0 AUR-AFUP-TTM1-A-1-1 AUR-AFUP-TTP1-A-1-0 AUR-AG0J-TTM1-A-1-0 AUR-AG0J-TTP1-A-1-0 AUR-AG0M-TTM1-A-2-1 AUR-AG0N-TTM1-A-1-1 AUR-AG0N-TTP1-A-1-0 +case_list_ids: AUR-AD9E-TTM1-A-2-1 AUR-AD9E-TTM2-A-1-1 AUR-AD9F-TTM1-A-1-1 AUR-AD9F-TTM2-A-2-1 AUR-AD9F-TTM3-A-1-1 AUR-AD9G-TTM1-A-2-1 AUR-AD9G-TTM2-A-1-1 AUR-AD9G-TTM3-A-1-1 AUR-AD9G-TTP1-B-4-0 AUR-AD9H-TTM1-A-2-1 AUR-AD9H-TTM2-A-1-1 AUR-AD9H-TTM3-A-1-1 AUR-AD9I-TTM3-A-1-1 AUR-ADCB-TTM1-A-1-1 AUR-ADCB-TTP1-A-13-0 AUR-AE5G-TTM1-A-1-1 AUR-AE5G-TTP1-A-1-1 AUR-AE5H-TTM1-A-1-1 AUR-AE5H-TTP1-A-1-1 AUR-AE6X-TTM1-A-1-1 AUR-AE6Y-TTM1-A-1-1 AUR-AE6Y-TTP1-A-1-0 AUR-AEPZ-TTM1-A-1-1 AUR-AEPZ-TTP1-A-1-1 AUR-AER2-TTM1-A-1-1 AUR-AER2-TTM3-A-1-1 AUR-AER2-TTP1-A-1-1 AUR-AER4-TTM1-A-1-1 AUR-AER4-TTM2-A-1-1 AUR-AER5-TTM4-A-1-1 AUR-AER5-TTM5-A-1-1 AUR-AER5-TTP2-A-1-1 AUR-AER5-TTP3-A-1-0 AUR-AER6-TTM1-A-1-1 AUR-AER6-TTM10-A-1-1 AUR-AER6-TTM2-A-1-1 AUR-AER6-TTM3-A-1-1 AUR-AER6-TTM5-A-1-1 AUR-AER6-TTM6-A-1-1 AUR-AER6-TTM7-A-1-1 AUR-AER6-TTM9-A-1-1 AUR-AER6-TTP1-A-1-0 AUR-AER7-TTM1-A-1-1 AUR-AER7-TTM2-A-1-1 AUR-AER7-TTM4-A-1-1 AUR-AER8-TTM1-A-1-1 AUR-AER8-TTM2-A-1-1 AUR-AER8-TTP1-A-1-0 AUR-AERW-TTP1-B-1-0 AUR-AERX-TTP1-A-1-0 AUR-AERY-TTM1-A-1-1 AUR-AF94-TTM1-A-1-1 AUR-AF94-TTP1-A-1-0 AUR-AF95-TTM1-A-1-1 AUR-AF95-TTP1-A-1-0 AUR-AF98-TTM1-A-1-1 AUR-AF98-TTP1-A-1-0 AUR-AF99-TTM1-A-1-1 AUR-AF9A-TTM1-A-1-1 AUR-AF9A-TTP1-A-1-0 AUR-AFE4-TTM1-A-1-1 AUR-AFE4-TTM2-A-1-1 AUR-AFE4-TTM3-A-1-1 AUR-AFE4-TTM4-A-1-1 AUR-AFE4-TTM5-A-1-1 AUR-AFE4-TTM6-A-1-1 AUR-AFE5-TTM1-A-1-1 AUR-AFE5-TTM10-A-1-1 AUR-AFE5-TTM2-A-1-1 AUR-AFE5-TTM4-A-1-1 AUR-AFE5-TTM5-A-1-1 AUR-AFE5-TTM6-A-1-1 AUR-AFE5-TTM7-A-1-1 AUR-AFE5-TTM8-A-1-1 AUR-AFE5-TTM9-A-1-1 AUR-AFE5-TTP1-A-1-0 AUR-AFE6-TTM1-A-1-1 AUR-AFE6-TTM2-A-1-1 AUR-AFE7-TTM1-A-1-1 AUR-AFE7-TTM2-A-1-1 AUR-AFE7-TTM3-A-1-1 AUR-AFE7-TTP2-A-1-1 AUR-AFE9-TTM1-A-1-1 AUR-AFE9-TTM3-A-1-1 AUR-AFE9-TTM4-A-1-1 AUR-AFEA-TTM1-A-1-1 AUR-AFEA-TTM2-A-1-1 AUR-AFEA-TTM3-A-1-1 AUR-AFEA-TTM4-A-1-1 AUR-AFEA-TTM6-A-1-0 AUR-AFEA-TTP2-A-1-0 AUR-AFEC-TTM1-A-1-1 AUR-AFEC-TTM3-A-1-1 AUR-AFEC-TTM4-A-1-1 AUR-AFEC-TTM6-A-1-1 AUR-AFEC-TTP1-A-1-0 AUR-AFKB-TTM1-A-1-1 AUR-AFKB-TTP1-A-10-0 AUR-AFKD-TTM1-A-1-1 AUR-AFKD-TTP1-A-1-1 AUR-AFKF-TTM1-A-1-1 AUR-AFKF-TTP1-A-10-0 AUR-AFR2-TTM1-A-1-1 AUR-AFR2-TTP1-A-1-1 AUR-AFR3-TTM1-A-1-1 AUR-AFR3-TTP1-A-2-1 AUR-AFR4-TTM1-A-1-1 AUR-AFR5-TTM1-A-1-1 AUR-AFR5-TTP1-A-1-1 AUR-AFSL-TTM1-A-8-0 AUR-AFSL-TTP1-A-8-0 AUR-AFSO-TTM1-A-8-0 AUR-AFSO-TTP1-A-8-0 AUR-AFUG-TTM1-A-1-1 AUR-AFUI-TTM1-A-1-0 AUR-AFUI-TTP1-A-1-0 AUR-AFUK-TTM1-A-1-0 AUR-AFUK-TTM2-A-1-0 AUR-AFUK-TTP1-A-1-0 AUR-AFUL-TTM1-A-1-1 AUR-AFUL-TTP1-A-1-1 AUR-AFUM-TTM1-A-1-1 AUR-AFUN-TTM1-A-1-0 AUR-AFUN-TTP1-A-1-0 AUR-AFUP-TTM1-A-1-1 AUR-AFUP-TTP1-A-1-0 AUR-AG0J-TTM1-A-1-0 AUR-AG0J-TTP1-A-1-0 AUR-AG0M-TTM1-A-2-1 AUR-AG0N-TTM1-A-1-1 AUR-AG0N-TTP1-A-1-0 diff --git a/public/brca_aurora_2022/case_lists/cases_samples_all.txt b/public/brca_aurora_2022/case_lists/cases_samples_all.txt index dd271cc571..8e3d031e16 100644 --- a/public/brca_aurora_2022/case_lists/cases_samples_all.txt +++ b/public/brca_aurora_2022/case_lists/cases_samples_all.txt @@ -3,4 +3,4 @@ stable_id: brca_aurora_2022_all case_list_name: All samples case_list_description: All samples case_list_category: all_cases_in_study -case_list_ids: AUR-AD9E-NT1-A-2-1 AUR-AD9E-TTM1-A-1-1 AUR-AD9E-TTM1-A-2-1 AUR-AD9E-TTM2-A-1-1 AUR-AD9E-TTM4-A-1-1 AUR-AD9F-TTM1-A-1-1 AUR-AD9F-TTM2-A-1-1 AUR-AD9F-TTM2-A-2-1 AUR-AD9F-TTM3-A-1-1 AUR-AD9G-NT1-A-1-1 AUR-AD9G-TTM1-A-1-1 AUR-AD9G-TTM1-A-2-1 AUR-AD9G-TTM2-A-1-1 AUR-AD9G-TTM3-A-1-1 AUR-AD9G-TTP1-B-4-0 AUR-AD9H-TTM1-A-2-1 AUR-AD9H-TTM2-A-1-1 AUR-AD9H-TTM3-A-1-1 AUR-AD9I-NT1-A-1-1 AUR-AD9I-TTM3-A-1-1 AUR-AD9J-TTP1-B-4-0 AUR-ADCB-TTM1-A-1-1 AUR-ADCB-TTP1-A-13-0 AUR-AE5G-NT1-A-1-1 AUR-AE5G-TTM1-A-1-1 AUR-AE5G-TTP1-A-1-1 AUR-AE5H-TTM1-A-1-1 AUR-AE5H-TTP1-A-1-1 AUR-AE6X-TTM1-A-1-1 AUR-AE6X-TTP1-A-1-0 AUR-AE6Y-TTM1-A-1-1 AUR-AE6Y-TTP1-A-1-0 AUR-AEPZ-TTM1-A-1-1 AUR-AEPZ-TTP1-A-1-1 AUR-AER2-TTM1-A-1-1 AUR-AER2-TTM3-A-1-1 AUR-AER2-TTP1-A-1-1 AUR-AER4-TTM1-A-1-1 AUR-AER4-TTM2-A-1-1 AUR-AER4-TTP1-A-1-0 AUR-AER5-TTM4-A-1-1 AUR-AER5-TTM5-A-1-1 AUR-AER5-TTP2-A-1-1 AUR-AER5-TTP3-A-1-0 AUR-AER6-TTM1-A-1-1 AUR-AER6-TTM10-A-1-1 AUR-AER6-TTM2-A-1-1 AUR-AER6-TTM3-A-1-1 AUR-AER6-TTM5-A-1-1 AUR-AER6-TTM6-A-1-1 AUR-AER6-TTM7-A-1-1 AUR-AER6-TTM9-A-1-1 AUR-AER6-TTP1-A-1-0 AUR-AER7-TTM1-A-1-1 AUR-AER7-TTM2-A-1-1 AUR-AER7-TTM4-A-1-1 AUR-AER7-TTP1-A-1-0 AUR-AER8-NT1-A-1-1 AUR-AER8-TTM1-A-1-1 AUR-AER8-TTM2-A-1-1 AUR-AER8-TTP1-A-1-0 AUR-AERW-TTM1-A-1-1 AUR-AERW-TTP1-B-1-0 AUR-AERX-TTM1-A-1-1 AUR-AERX-TTP1-A-1-0 AUR-AERY-TTM1-A-1-1 AUR-AERY-TTP1-A-1-0 AUR-AF94-TTM1-A-1-1 AUR-AF94-TTP1-A-1-0 AUR-AF95-TTM1-A-1-1 AUR-AF95-TTP1-A-1-0 AUR-AF98-TTM1-A-1-1 AUR-AF98-TTP1-A-1-0 AUR-AF99-TTM1-A-1-1 AUR-AF99-TTP1-A-1-0 AUR-AF9A-TTM1-A-1-1 AUR-AF9A-TTP1-A-1-0 AUR-AFE4-TTM1-A-1-1 AUR-AFE4-TTM2-A-1-1 AUR-AFE4-TTM3-A-1-1 AUR-AFE4-TTM4-A-1-1 AUR-AFE4-TTM5-A-1-1 AUR-AFE4-TTM6-A-1-1 AUR-AFE4-TTP1-A-1-0 AUR-AFE5-TTM1-A-1-1 AUR-AFE5-TTM10-A-1-1 AUR-AFE5-TTM2-A-1-1 AUR-AFE5-TTM4-A-1-1 AUR-AFE5-TTM5-A-1-1 AUR-AFE5-TTM6-A-1-1 AUR-AFE5-TTM7-A-1-1 AUR-AFE5-TTM8-A-1-1 AUR-AFE5-TTM9-A-1-1 AUR-AFE5-TTP1-A-1-0 AUR-AFE6-TTM1-A-1-1 AUR-AFE6-TTM2-A-1-1 AUR-AFE6-TTP1-A-1-0 AUR-AFE7-NT1-A-1-1 AUR-AFE7-TTM1-A-1-1 AUR-AFE7-TTM2-A-1-1 AUR-AFE7-TTM3-A-1-1 AUR-AFE7-TTP2-A-1-1 AUR-AFE9-TTM1-A-1-1 AUR-AFE9-TTM2-A-1-1 AUR-AFE9-TTM3-A-1-1 AUR-AFE9-TTM4-A-1-1 AUR-AFE9-TTP1-A-1-0 AUR-AFEA-TTM1-A-1-1 AUR-AFEA-TTM2-A-1-1 AUR-AFEA-TTM3-A-1-1 AUR-AFEA-TTM4-A-1-1 AUR-AFEA-TTM6-A-1-0 AUR-AFEA-TTP1-A-1-0 AUR-AFEA-TTP2-A-1-0 AUR-AFEC-NT1-A-1-1 AUR-AFEC-TTM1-A-1-1 AUR-AFEC-TTM3-A-1-1 AUR-AFEC-TTM4-A-1-1 AUR-AFEC-TTM5-A-1-1 AUR-AFEC-TTM6-A-1-1 AUR-AFEC-TTP1-A-1-0 AUR-AFEC-TTP2-A-1-1 AUR-AFKB-TTM1-A-1-1 AUR-AFKB-TTP1-A-10-0 AUR-AFKD-TTM1-A-1-1 AUR-AFKD-TTP1-A-1-1 AUR-AFKF-TTM1-A-1-1 AUR-AFKF-TTP1-A-10-0 AUR-AFR2-TTM1-A-1-1 AUR-AFR2-TTP1-A-1-1 AUR-AFR3-TTM1-A-1-1 AUR-AFR3-TTP1-A-2-1 AUR-AFR4-TTM1-A-1-1 AUR-AFR4-TTP1-A-1-1 AUR-AFR5-TTM1-A-1-1 AUR-AFR5-TTP1-A-1-1 AUR-AFSL-TTM1-A-8-0 AUR-AFSL-TTP1-A-8-0 AUR-AFSO-TTM1-A-8-0 AUR-AFSO-TTP1-A-8-0 AUR-AFSP-TTM1-A-8-0 AUR-AFSP-TTP1-A-8-0 AUR-AFUG-TTM1-A-1-1 AUR-AFUI-TTM1-A-1-0 AUR-AFUI-TTP1-A-1-0 AUR-AFUK-TTM1-A-1-0 AUR-AFUK-TTM2-A-1-0 AUR-AFUK-TTP1-A-1-0 AUR-AFUL-TTM1-A-1-1 AUR-AFUL-TTP1-A-1-1 AUR-AFUM-TTM1-A-1-1 AUR-AFUM-TTP1-A-1-0 AUR-AFUN-TTM1-A-1-0 AUR-AFUN-TTP1-A-1-0 AUR-AFUO-TTP1-A-1-0 AUR-AFUP-TTM1-A-1-1 AUR-AFUP-TTP1-A-1-0 AUR-AG0J-TTM1-A-1-0 AUR-AG0J-TTP1-A-1-0 AUR-AG0M-TTM1-A-2-1 AUR-AG0M-TTP1-A-2-0 AUR-AG0N-TTM1-A-1-1 AUR-AG0N-TTP1-A-1-0 AUR-AG12-TTM1-A-1-1 AUR-AG12-TTP1-A-1-0 +case_list_ids: AUR-AD9E-TTM1-A-1-1 AUR-AD9E-TTM1-A-2-1 AUR-AD9E-TTM2-A-1-1 AUR-AD9E-TTM4-A-1-1 AUR-AD9F-TTM1-A-1-1 AUR-AD9F-TTM2-A-1-1 AUR-AD9F-TTM2-A-2-1 AUR-AD9F-TTM3-A-1-1 AUR-AD9G-TTM1-A-1-1 AUR-AD9G-TTM1-A-2-1 AUR-AD9G-TTM2-A-1-1 AUR-AD9G-TTM3-A-1-1 AUR-AD9G-TTP1-B-4-0 AUR-AD9H-TTM1-A-2-1 AUR-AD9H-TTM2-A-1-1 AUR-AD9H-TTM3-A-1-1 AUR-AD9I-TTM3-A-1-1 AUR-AD9J-TTP1-B-4-0 AUR-ADCB-TTM1-A-1-1 AUR-ADCB-TTP1-A-13-0 AUR-AE5G-TTM1-A-1-1 AUR-AE5G-TTP1-A-1-1 AUR-AE5H-TTM1-A-1-1 AUR-AE5H-TTP1-A-1-1 AUR-AE6X-TTM1-A-1-1 AUR-AE6X-TTP1-A-1-0 AUR-AE6Y-TTM1-A-1-1 AUR-AE6Y-TTP1-A-1-0 AUR-AEPZ-TTM1-A-1-1 AUR-AEPZ-TTP1-A-1-1 AUR-AER2-TTM1-A-1-1 AUR-AER2-TTM3-A-1-1 AUR-AER2-TTP1-A-1-1 AUR-AER4-TTM1-A-1-1 AUR-AER4-TTM2-A-1-1 AUR-AER4-TTP1-A-1-0 AUR-AER5-TTM4-A-1-1 AUR-AER5-TTM5-A-1-1 AUR-AER5-TTP2-A-1-1 AUR-AER5-TTP3-A-1-0 AUR-AER6-TTM1-A-1-1 AUR-AER6-TTM10-A-1-1 AUR-AER6-TTM2-A-1-1 AUR-AER6-TTM3-A-1-1 AUR-AER6-TTM5-A-1-1 AUR-AER6-TTM6-A-1-1 AUR-AER6-TTM7-A-1-1 AUR-AER6-TTM9-A-1-1 AUR-AER6-TTP1-A-1-0 AUR-AER7-TTM1-A-1-1 AUR-AER7-TTM2-A-1-1 AUR-AER7-TTM4-A-1-1 AUR-AER7-TTP1-A-1-0 AUR-AER8-TTM1-A-1-1 AUR-AER8-TTM2-A-1-1 AUR-AER8-TTP1-A-1-0 AUR-AERW-TTM1-A-1-1 AUR-AERW-TTP1-B-1-0 AUR-AERX-TTM1-A-1-1 AUR-AERX-TTP1-A-1-0 AUR-AERY-TTM1-A-1-1 AUR-AERY-TTP1-A-1-0 AUR-AF94-TTM1-A-1-1 AUR-AF94-TTP1-A-1-0 AUR-AF95-TTM1-A-1-1 AUR-AF95-TTP1-A-1-0 AUR-AF98-TTM1-A-1-1 AUR-AF98-TTP1-A-1-0 AUR-AF99-TTM1-A-1-1 AUR-AF99-TTP1-A-1-0 AUR-AF9A-TTM1-A-1-1 AUR-AF9A-TTP1-A-1-0 AUR-AFE4-TTM1-A-1-1 AUR-AFE4-TTM2-A-1-1 AUR-AFE4-TTM3-A-1-1 AUR-AFE4-TTM4-A-1-1 AUR-AFE4-TTM5-A-1-1 AUR-AFE4-TTM6-A-1-1 AUR-AFE4-TTP1-A-1-0 AUR-AFE5-TTM1-A-1-1 AUR-AFE5-TTM10-A-1-1 AUR-AFE5-TTM2-A-1-1 AUR-AFE5-TTM4-A-1-1 AUR-AFE5-TTM5-A-1-1 AUR-AFE5-TTM6-A-1-1 AUR-AFE5-TTM7-A-1-1 AUR-AFE5-TTM8-A-1-1 AUR-AFE5-TTM9-A-1-1 AUR-AFE5-TTP1-A-1-0 AUR-AFE6-TTM1-A-1-1 AUR-AFE6-TTM2-A-1-1 AUR-AFE6-TTP1-A-1-0 AUR-AFE7-TTM1-A-1-1 AUR-AFE7-TTM2-A-1-1 AUR-AFE7-TTM3-A-1-1 AUR-AFE7-TTP2-A-1-1 AUR-AFE9-TTM1-A-1-1 AUR-AFE9-TTM2-A-1-1 AUR-AFE9-TTM3-A-1-1 AUR-AFE9-TTM4-A-1-1 AUR-AFE9-TTP1-A-1-0 AUR-AFEA-TTM1-A-1-1 AUR-AFEA-TTM2-A-1-1 AUR-AFEA-TTM3-A-1-1 AUR-AFEA-TTM4-A-1-1 AUR-AFEA-TTM6-A-1-0 AUR-AFEA-TTP1-A-1-0 AUR-AFEA-TTP2-A-1-0 AUR-AFEC-TTM1-A-1-1 AUR-AFEC-TTM3-A-1-1 AUR-AFEC-TTM4-A-1-1 AUR-AFEC-TTM5-A-1-1 AUR-AFEC-TTM6-A-1-1 AUR-AFEC-TTP1-A-1-0 AUR-AFEC-TTP2-A-1-1 AUR-AFKB-TTM1-A-1-1 AUR-AFKB-TTP1-A-10-0 AUR-AFKD-TTM1-A-1-1 AUR-AFKD-TTP1-A-1-1 AUR-AFKF-TTM1-A-1-1 AUR-AFKF-TTP1-A-10-0 AUR-AFR2-TTM1-A-1-1 AUR-AFR2-TTP1-A-1-1 AUR-AFR3-TTM1-A-1-1 AUR-AFR3-TTP1-A-2-1 AUR-AFR4-TTM1-A-1-1 AUR-AFR4-TTP1-A-1-1 AUR-AFR5-TTM1-A-1-1 AUR-AFR5-TTP1-A-1-1 AUR-AFSL-TTM1-A-8-0 AUR-AFSL-TTP1-A-8-0 AUR-AFSO-TTM1-A-8-0 AUR-AFSO-TTP1-A-8-0 AUR-AFSP-TTM1-A-8-0 AUR-AFSP-TTP1-A-8-0 AUR-AFUG-TTM1-A-1-1 AUR-AFUI-TTM1-A-1-0 AUR-AFUI-TTP1-A-1-0 AUR-AFUK-TTM1-A-1-0 AUR-AFUK-TTM2-A-1-0 AUR-AFUK-TTP1-A-1-0 AUR-AFUL-TTM1-A-1-1 AUR-AFUL-TTP1-A-1-1 AUR-AFUM-TTM1-A-1-1 AUR-AFUM-TTP1-A-1-0 AUR-AFUN-TTM1-A-1-0 AUR-AFUN-TTP1-A-1-0 AUR-AFUO-TTP1-A-1-0 AUR-AFUP-TTM1-A-1-1 AUR-AFUP-TTP1-A-1-0 AUR-AG0J-TTM1-A-1-0 AUR-AG0J-TTP1-A-1-0 AUR-AG0M-TTM1-A-2-1 AUR-AG0M-TTP1-A-2-0 AUR-AG0N-TTM1-A-1-1 AUR-AG0N-TTP1-A-1-0 AUR-AG12-TTM1-A-1-1 AUR-AG12-TTP1-A-1-0 diff --git a/public/brca_aurora_2022/data_clinical_patient.txt b/public/brca_aurora_2022/data_clinical_patient.txt index ce88ba2ad6..94668f07e9 100644 --- a/public/brca_aurora_2022/data_clinical_patient.txt +++ b/public/brca_aurora_2022/data_clinical_patient.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:e8238fe47201635172012995ea1621019506d3ab112435c7b0dd586c9c037b56 -size 18726 +oid 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