1.5.3 - hotfix release

Fixes for cpanm use in setup.sh

1.5.1 - hotfix for perl-lib removal

Archive-Extract was removed from core perl libs at 5.20, added to perl dependencies.

1.5.0 - HTSlib conversion

Removed Bio::DB::Sam in preference for Bio::DB::HTS

1.4.0 - Handle het SNPs with low coverage

This will fix issues during GetHaplotypedBAFs.R step for male donors.

1.3.1 - Install scripts

Primarily a release to simplify installation and add more informative error messages.

Updated to allow male samples to pass without X results

Merge pull request #5 from cancerit/dev

Modified to allow male samples through even if 23/X results don't exist