_toc.yml

- file: pages/main

- part: Models
  chapters:
    - file: pages/models/introduction
      title: Introduction to DPM
    - file: pages/models/event_based_model
      title: Event Based Model
    - file: pages/models/disease_course_mapping
      title: Disease Course Mapping
    - file: pages/models/non_parametric_DPM
      title: GP Progression Model

- part: Notebooks
  chapters:
  - file: pages/notebooks/overview

  - file: pages/notebooks/ebm/ebm
    sections:
      - file: pages/notebooks/ebm/T1_kde_ebm_walkthrough.ipynb
        title: Tutorial 1 - EBM Walkthrough
      - file: pages/notebooks/ebm/T2_pyEBM_walkthrough.ipynb
        title: Tutorial 2 - DEBM Walkthrough

  - file: pages/notebooks/disease_course_mapping/disease_course_mapping
    sections:
      - file: pages/notebooks/disease_course_mapping/TP1_LMM
        title: Tutorial 1 - Linear Mixed Effect Models
      - file: pages/notebooks/disease_course_mapping/TP2_leaspy_beginner
        title: Tutorial 2 - Get ready with Leaspy
      - file: pages/notebooks/disease_course_mapping/TP3_advanced_leaspy
        title: Tutorial 3 - Leaspy advanced

  - file: pages/notebooks/non_parametric_DPM/non_parametric_DPM
    sections:
      - file: pages/notebooks/non_parametric_DPM/GPPM_basic
        title: Tutorial 1 - GP Progression Model Walkthrough
      - file: pages/notebooks/non_parametric_DPM/GPPM_DS
        title: Tutorial 2 - GP Progression Model with Dynamical Systems Walkthrough

  # - file: pages/notebooks/data_simulation/data_simulation
  #   sections:
  #     - file: pages/notebooks/data_simulation/debm
  #     - file: pages/notebooks/data_simulation/non_parametric_DPM

- part: Conferences
  chapters:
  - file: pages/conferences/conferences
  - file: pages/conferences/MICCAI
  - file: pages/conferences/ISBI

- part: Other
  chapters:
  - file: pages/other/contributors