diff --git a/environment.yml b/environment.yml index dbdfb7d..37681a8 100644 --- a/environment.yml +++ b/environment.yml @@ -19,7 +19,7 @@ dependencies: - predector::effectorp3=3.0=py_2 - predector::localizer=1.0.4 - predector::phobius=1.01=5 - - predector::predectorutils=0.9.1 + - predector::predectorutils=0.9.2 - predector::signalp3=3.0b=3 - predector::signalp4=4.1g=3 - predector::signalp5=5.0b diff --git a/nextflow.config b/nextflow.config index 7007596..e820d8f 100644 --- a/nextflow.config +++ b/nextflow.config @@ -64,8 +64,8 @@ params { dbcan_targets = "${baseDir}/data/dbcan_targets.txt" private_phibase_version = "v4-17" // The PHI-base team often rename files. Best to get a release from a commit rather than master. - private_phibase_url = "https://github.com/PHI-base/data/blob/38c9034d754482986f2f9f73b3b46d5bb7da1615/releases/phi-base_v4-17_2024-05-01.fas" - private_dbcan_version = "V13" + private_phibase_url = "https://raw.githubusercontent.com/PHI-base/data/08895a81b0bfde0ba682c5b61742f5b89e186105/releases/phi-base_v4-17_2024-05-01.fas" + private_dbcan_version = "V13" private_dbcan_url = "https://bcb.unl.edu/dbCAN2/download/dbCAN-HMMdb-V13.txt" private_effectordb_url = "https://figshare.com/ndownloader/files/31397770" private_effectordb_version = "1" @@ -78,6 +78,8 @@ includeConfig "${baseDir}/conf/c4.config" includeConfig "${baseDir}/conf/r8.config" process.container = "predector/predector:${manifest.version}" +report.overwrite = true +timeline.overwrite = true profiles { docker {