From 6d5c412ad03b6e8688f3302c5961e1a1eca240c8 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 4 Oct 2024 04:56:33 +0000 Subject: [PATCH 01/16] chore(deps): Bump cda-tum/mqt-workflows in the github-actions group Bumps the github-actions group with 1 update: [cda-tum/mqt-workflows](https://github.com/cda-tum/mqt-workflows). Updates `cda-tum/mqt-workflows` from 1.3 to 1.4 - [Release notes](https://github.com/cda-tum/mqt-workflows/releases) - [Commits](https://github.com/cda-tum/mqt-workflows/compare/v1.3...v1.4) --- updated-dependencies: - dependency-name: cda-tum/mqt-workflows dependency-type: direct:production update-type: version-update:semver-minor dependency-group: github-actions ... Signed-off-by: dependabot[bot] --- .github/workflows/cd.yml | 2 +- .github/workflows/ci.yml | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/cd.yml b/.github/workflows/cd.yml index 405c068..68d784e 100644 --- a/.github/workflows/cd.yml +++ b/.github/workflows/cd.yml @@ -10,7 +10,7 @@ on: jobs: python-packaging: name: 🐍 Packaging - uses: cda-tum/mqt-workflows/.github/workflows/reusable-python-packaging.yml@v1.3 + uses: cda-tum/mqt-workflows/.github/workflows/reusable-python-packaging.yml@v1.4 with: pure-python: true diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 09e1a9b..82ac9b7 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -14,13 +14,13 @@ concurrency: jobs: change-detection: name: 🔍 Change - uses: cda-tum/mqt-workflows/.github/workflows/reusable-change-detection.yml@v1.3 + uses: cda-tum/mqt-workflows/.github/workflows/reusable-change-detection.yml@v1.4 python-tests: name: 🐍 Test needs: change-detection if: fromJSON(needs.change-detection.outputs.run-python-tests) - uses: cda-tum/mqt-workflows/.github/workflows/reusable-python-ci.yml@v1.3 + uses: cda-tum/mqt-workflows/.github/workflows/reusable-python-ci.yml@v1.4 with: skip-testing-latest-python: true @@ -28,7 +28,7 @@ jobs: name: 📝 CodeQL needs: change-detection if: fromJSON(needs.change-detection.outputs.run-code-ql) - uses: cda-tum/mqt-workflows/.github/workflows/reusable-code-ql-python.yml@v1.3 + uses: cda-tum/mqt-workflows/.github/workflows/reusable-code-ql-python.yml@v1.4 required-checks-pass: # This job does nothing and is only used for branch protection name: 🚦 Check From 6e3cd6e94c2adc000ac74f4c7f872bfe710cd08b Mon Sep 17 00:00:00 2001 From: DRovara Date: Wed, 9 Oct 2024 14:37:23 +0200 Subject: [PATCH 02/16] build: :heavy_minus_sign: Remove unused python_tsp dependency --- .pre-commit-config.yaml | 1 - .python_version | 1 + pyproject.toml | 7 +++---- 3 files changed, 4 insertions(+), 5 deletions(-) create mode 100644 .python_version diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index e03d960..6140c71 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -88,7 +88,6 @@ repos: additional_dependencies: - importlib_resources - types-setuptools - - python_tsp - networkx - pytest - sympy diff --git a/.python_version b/.python_version new file mode 100644 index 0000000..e4fba21 --- /dev/null +++ b/.python_version @@ -0,0 +1 @@ +3.12 diff --git a/pyproject.toml b/pyproject.toml index 811649e..1693ad5 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -29,7 +29,6 @@ dependencies = [ "matplotlib>=3.9.0; python_version > '3.11'", "matplotlib>=3.7.0; python_version <= '3.11'", "networkx>=2.8.8", - "python_tsp>=0.4.0", "docplex>=2.25.236", "qiskit_optimization>=0.6.0", "tsplib95>=0.7.1", @@ -61,7 +60,7 @@ classifiers = [ ] [project.optional-dependencies] -test = ["pytest>=7"] +test = ["pytest>=7.2"] coverage = ["mqt.qubomaker[test]", "pytest-cov>=4"] docs = [ "furo>=2023.08.17", @@ -92,7 +91,7 @@ Discussions = "https://github.com/cda-tum/mqt-qubomaker/discussions" "mqt.qubomaker.pathfinder" = ["resources/*", "resources/constraints/*"] [tool.pytest.ini_options] -minversion = "7.0" +minversion = "7.2" testpaths = ["tests"] addopts = ["-ra", "--strict-markers", "--strict-config", "--showlocals"] log_cli_level = "INFO" @@ -123,7 +122,7 @@ explicit_package_bases = true pretty = true [[tool.mypy.overrides]] -module = ["types-Pillow", "jsonschema", "tsplib95.*", "ipywidgets.*", "IPython.*", "qiskit.*", "qiskit_algorithms.*", "matplotlib.*", "python_tsp.*", "networkx.*", "mqt.ddsim.*", "joblib.*", "qiskit_optimization.*", "docplex.*", "typing_extensions.*"] +module = ["types-Pillow", "jsonschema", "tsplib95.*", "ipywidgets.*", "IPython.*", "qiskit.*", "qiskit_algorithms.*", "matplotlib.*", "networkx.*", "mqt.ddsim.*", "joblib.*", "qiskit_optimization.*", "docplex.*", "typing_extensions.*"] ignore_missing_imports = true [tool.ruff] From 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17 00:00:00 2001 From: DRovara Date: Wed, 9 Oct 2024 17:09:02 +0200 Subject: [PATCH 04/16] fix: :bug: Remove "skip latest version" from workflow This seems to be no longer supported --- .github/workflows/ci.yml | 2 -- noxfile.py | 2 +- tests/resources/graph/graph | 2 +- 3 files changed, 2 insertions(+), 4 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 82ac9b7..8bf01da 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -21,8 +21,6 @@ jobs: needs: change-detection if: fromJSON(needs.change-detection.outputs.run-python-tests) uses: cda-tum/mqt-workflows/.github/workflows/reusable-python-ci.yml@v1.4 - with: - skip-testing-latest-python: true code-ql: name: 📝 CodeQL diff --git a/noxfile.py b/noxfile.py index e805bd6..9afaecc 100644 --- a/noxfile.py +++ b/noxfile.py @@ -16,7 +16,7 @@ nox.options.sessions = ["lint", "tests"] -PYTHON_ALL_VERSIONS = ["3.9", "3.10", "3.11", "3.12", "3.13"] +PYTHON_ALL_VERSIONS = ["3.9", "3.10", "3.11", "3.12"] BUILD_REQUIREMENTS = [ "setuptools_scm>=8.1", diff --git a/tests/resources/graph/graph b/tests/resources/graph/graph index 0bea677..6a04315 100644 --- a/tests/resources/graph/graph +++ b/tests/resources/graph/graph @@ -2,4 +2,4 @@ 0. 0. 0. 3. 0. 0. 0. 0. 0. 2. 0. 0. 0. 0. 5. -1. 0. 0. 0. 0. +1. 0. 0. 0. 0. \ No newline at end of file From 1cbe6d46f5b72ab0a8b7380deb4dab59e1be837c Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Wed, 9 Oct 2024 15:09:33 +0000 Subject: [PATCH 05/16] =?UTF-8?q?=F0=9F=8E=A8=20pre-commit=20fixes?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- tests/resources/graph/graph | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/resources/graph/graph b/tests/resources/graph/graph index 6a04315..0bea677 100644 --- a/tests/resources/graph/graph +++ b/tests/resources/graph/graph @@ -2,4 +2,4 @@ 0. 0. 0. 3. 0. 0. 0. 0. 0. 2. 0. 0. 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From 4a4d96233aeb95ad36169192fba28ebf96423875 Mon Sep 17 00:00:00 2001 From: Damian Rovara Date: Wed, 9 Oct 2024 17:27:34 +0200 Subject: [PATCH 06/16] fix: :recycle: Fix mypy issues --- pyproject.toml | 4 ++-- src/mqt/qubomaker/graph.py | 4 ++-- src/mqt/qubomaker/pathfinder/cost_functions.py | 2 +- tests/resources/graph/graph | 2 +- 4 files changed, 6 insertions(+), 6 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 1693ad5..8de85be 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -114,7 +114,7 @@ report.exclude_also = [ [tool.mypy] mypy_path = "$MYPY_CONFIG_FILE_DIR/src,$MYPY_CONFIG_FILE_DIR/stubs" files = ["src", "tests"] -python_version = "3.8" +python_version = "3.9" strict = true enable_error_code = ["ignore-without-code", "redundant-expr", "truthy-bool"] warn_unreachable = true @@ -122,7 +122,7 @@ explicit_package_bases = true pretty = true [[tool.mypy.overrides]] -module = ["types-Pillow", "jsonschema", "tsplib95.*", "ipywidgets.*", "IPython.*", "qiskit.*", "qiskit_algorithms.*", "matplotlib.*", "networkx.*", "mqt.ddsim.*", "joblib.*", "qiskit_optimization.*", "docplex.*", "typing_extensions.*"] +module = ["types-Pillow", "jsonschema", "tsplib95.*", "ipywidgets.*", "IPython.*", "qiskit.*", "qiskit_algorithms.*", "matplotlib.*", "networkx.*", "mqt.ddsim.*", "joblib.*", "qiskit_optimization.*", "docplex.*", "typing_extensions.*", "numpy.*"] ignore_missing_imports = true [tool.ruff] diff --git a/src/mqt/qubomaker/graph.py b/src/mqt/qubomaker/graph.py index 19de119..4e495d6 100644 --- a/src/mqt/qubomaker/graph.py +++ b/src/mqt/qubomaker/graph.py @@ -2,7 +2,7 @@ from __future__ import annotations -from typing import TYPE_CHECKING, Tuple, Union +from typing import TYPE_CHECKING, Tuple, Union, cast import networkx as nx import numpy as np @@ -162,7 +162,7 @@ def __eq__(self, value: object) -> bool: """ if not isinstance(value, Graph): return False - return np.array_equal(self.adjacency_matrix, value.adjacency_matrix) + return cast(bool, np.array_equal(self.adjacency_matrix, value.adjacency_matrix)) def __hash__(self) -> int: """Returns the hash of the graph. diff --git a/src/mqt/qubomaker/pathfinder/cost_functions.py b/src/mqt/qubomaker/pathfinder/cost_functions.py index 64b976f..65de0ae 100644 --- a/src/mqt/qubomaker/pathfinder/cost_functions.py +++ b/src/mqt/qubomaker/pathfinder/cost_functions.py @@ -1284,7 +1284,7 @@ def get_variable_function(p: Any, v: Any, i: Any, _n: int = 0) -> sp.Expr: @override def get_formula_domain_wall(self, graph: Graph, settings: pathfinder.PathFindingQUBOGeneratorSettings) -> sp.Expr: general = self.get_formula_general(graph, settings, FormulaHelpers.get_encoding_variable_domain_wall) - enforce_domain_wall_penalty = ( + enforce_domain_wall_penalty: sp.Expr = ( 2 * settings.max_path_length * np.max(graph.adjacency_matrix) + graph.n_vertices**2 ) # This ensures that the domain wall condition (x_i = 0 -> x_{i+1} = 0) is not broken to achieve better cost in other cost functions. diff --git a/tests/resources/graph/graph b/tests/resources/graph/graph index 6a04315..0bea677 100644 --- a/tests/resources/graph/graph +++ b/tests/resources/graph/graph @@ -2,4 +2,4 @@ 0. 0. 0. 3. 0. 0. 0. 0. 0. 2. 0. 0. 0. 0. 5. -1. 0. 0. 0. 0. \ No newline at end of file +1. 0. 0. 0. 0. From 55db0b0adef31ec29a66ee7b072934e5a7f3f592 Mon Sep 17 00:00:00 2001 From: Damian Rovara Date: Thu, 10 Oct 2024 10:58:10 +0200 Subject: [PATCH 07/16] build: :arrow_up: Update numpy dependency for python <= 3.11 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 8de85be..53a4058 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -24,7 +24,7 @@ dependencies = [ "qiskit>=1.0.0", "joblib>=1.3.2", "numpy>=1.26.4,<3.0; python_version > '3.11'", # some of our dependencies are not yet compatible with numpy 2.0 - "numpy>=1.17.0,<2.0; python_version <= '3.11'", # some of our dependencies are not yet compatible with numpy 2.0 + "numpy>=1.26.0,<2.0; python_version <= '3.11'", # some of our dependencies are not yet compatible with numpy 2.0 "sympy>=1.13.1", "matplotlib>=3.9.0; python_version > '3.11'", "matplotlib>=3.7.0; python_version <= '3.11'", From dd9622533db1f28b7b2dbe1f93e1af10464576ff Mon Sep 17 00:00:00 2001 From: burgholzer Date: Thu, 10 Oct 2024 15:09:40 +0200 Subject: [PATCH 08/16] =?UTF-8?q?=F0=9F=94=A5=20drop=20Python=203.8=20supp?= =?UTF-8?q?ort?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- pyproject.toml | 2 +- src/mqt/qubomaker/graph.py | 4 ++-- src/mqt/qubomaker/pathfinder/cost_functions.py | 12 ++++++------ src/mqt/qubomaker/pathfinder/pathfinder.py | 4 ++-- src/mqt/qubomaker/utils.py | 5 ++++- 5 files changed, 15 insertions(+), 12 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 53a4058..1034b26 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -16,7 +16,7 @@ authors = [ ] keywords = ["MQT", "quantum-computing", "qubo", "shortest-path", "design-automation"] license = { file = "LICENSE" } -requires-python = ">=3.8" +requires-python = ">=3.9" dynamic = ["version"] dependencies = [ diff --git a/src/mqt/qubomaker/graph.py b/src/mqt/qubomaker/graph.py index 4e495d6..0fb8958 100644 --- a/src/mqt/qubomaker/graph.py +++ b/src/mqt/qubomaker/graph.py @@ -2,7 +2,7 @@ from __future__ import annotations -from typing import TYPE_CHECKING, Tuple, Union, cast +from typing import TYPE_CHECKING, Union, cast import networkx as nx import numpy as np @@ -12,7 +12,7 @@ if TYPE_CHECKING: from io import TextIOWrapper - Edge = Union[Tuple[int, int], Tuple[int, int, int], Tuple[int, int, float]] + Edge = Union[tuple[int, int], tuple[int, int, int], tuple[int, int, float]] class Graph: diff --git a/src/mqt/qubomaker/pathfinder/cost_functions.py b/src/mqt/qubomaker/pathfinder/cost_functions.py index 65de0ae..021d8a0 100644 --- a/src/mqt/qubomaker/pathfinder/cost_functions.py +++ b/src/mqt/qubomaker/pathfinder/cost_functions.py @@ -5,7 +5,7 @@ import functools from abc import ABC, abstractmethod from enum import Enum -from typing import TYPE_CHECKING, Any, Callable, List, Tuple, Union, cast +from typing import TYPE_CHECKING, Any, Callable, Union, cast import numpy as np import sympy as sp @@ -17,7 +17,7 @@ GetVariableFunction = Callable[[Any, Any, Any, int], sp.Expr] -SetCallback = Callable[[], List[Union[sp.Expr, int, float, Tuple[Union[sp.Expr, int, float], ...]]]] +SetCallback = Callable[[], list[Union[sp.Expr, int, float, tuple[Union[sp.Expr, int, float], ...]]]] class EncodingType(Enum): @@ -1222,7 +1222,7 @@ def get_formula_general( ), ["v", "w"], "\\in E", - lambda: cast(List[Union[sp.Expr, int, float, Tuple[Union[sp.Expr, int, float], ...]]], graph.all_edges), + lambda: cast(list[Union[sp.Expr, int, float, tuple[Union[sp.Expr, int, float], ...]]], graph.all_edges), ) @@ -1260,7 +1260,7 @@ def get_formula_general( ), ["v", "w"], "\\not\\in E", - lambda: cast(List[Union[sp.Expr, int, float, Tuple[Union[sp.Expr, int, float], ...]]], graph.non_edges), + lambda: cast(list[Union[sp.Expr, int, float, tuple[Union[sp.Expr, int, float], ...]]], graph.non_edges), ), self.path_ids, ) @@ -1338,7 +1338,7 @@ def get_formula_general( ), ["v", "w"], "\\in E", - lambda: cast(List[Union[sp.Expr, int, float, Tuple[Union[sp.Expr, int, float], ...]]], graph.all_edges), + lambda: cast(list[Union[sp.Expr, int, float, tuple[Union[sp.Expr, int, float], ...]]], graph.all_edges), ), self.path_ids, ) @@ -1375,7 +1375,7 @@ def get_formula_general( ), ["v", "w"], "\\in E", - lambda: cast(List[Union[sp.Expr, int, float, Tuple[Union[sp.Expr, int, float], ...]]], graph.all_edges), + lambda: cast(list[Union[sp.Expr, int, float, tuple[Union[sp.Expr, int, float], ...]]], graph.all_edges), ), self.path_ids, ) diff --git a/src/mqt/qubomaker/pathfinder/pathfinder.py b/src/mqt/qubomaker/pathfinder/pathfinder.py index eb04fb3..0f0d847 100644 --- a/src/mqt/qubomaker/pathfinder/pathfinder.py +++ b/src/mqt/qubomaker/pathfinder/pathfinder.py @@ -5,7 +5,7 @@ import json import sys from dataclasses import dataclass -from typing import TYPE_CHECKING, Any, List, cast +from typing import TYPE_CHECKING, Any, cast if TYPE_CHECKING or sys.version_info < (3, 10, 0): import importlib_resources as resources @@ -165,7 +165,7 @@ def get_vertices_possibly_all(constraint: dict[str, Any]) -> list[int]: vertices = constraint.get("vertices", []) if len(vertices) == 0: vertices = graph.all_vertices - return cast(List[int], vertices) + return cast(list[int], vertices) def get_edges_possibly_all(constraint: dict[str, Any]) -> list[tuple[int, int]]: edges = [tuple(edge) for edge in constraint.get("edges", [])] diff --git a/src/mqt/qubomaker/utils.py b/src/mqt/qubomaker/utils.py index c6e1ec1..1137da1 100644 --- a/src/mqt/qubomaker/utils.py +++ b/src/mqt/qubomaker/utils.py @@ -2,13 +2,16 @@ from __future__ import annotations -from typing import Iterable, no_type_check +from typing import TYPE_CHECKING, no_type_check import numpy as np import numpy.typing as npt from IPython.display import Math, clear_output, display from ipywidgets import widgets +if TYPE_CHECKING: + from collections.abc import Iterable + @no_type_check def print_matrix(array: Iterable[Iterable[float]]) -> None: From f03ab8c058a77f67bf183f6bd7d308fc447588c2 Mon Sep 17 00:00:00 2001 From: burgholzer Date: Thu, 10 Oct 2024 15:24:02 +0200 Subject: [PATCH 09/16] =?UTF-8?q?=F0=9F=93=8C=20refine=20documentation=20d?= =?UTF-8?q?ependencies?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- docs/conf.py | 15 --------------- pyproject.toml | 12 ++++-------- 2 files changed, 4 insertions(+), 23 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index 5e96b85..629d251 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -55,7 +55,6 @@ "sphinx.ext.githubpages", "sphinxcontrib.bibtex", "sphinx_copybutton", - "hoverxref.extension", "nbsphinx", "sphinxext.opengraph", "sphinx_autodoc_typehints", @@ -84,20 +83,6 @@ autosectionlabel_prefix_document = True -hoverxref_auto_ref = True -hoverxref_domains = ["cite", "py"] -hoverxref_roles = [] -hoverxref_mathjax = True -hoverxref_role_types = { - "ref": "tooltip", - "p": "tooltip", - "labelpar": "tooltip", - "class": "tooltip", - "meth": "tooltip", - "func": "tooltip", - "attr": "tooltip", - "property": "tooltip", -} exclude_patterns = ["_build", "build", "**.ipynb_checkpoints", "Thumbs.db", ".DS_Store", ".env"] diff --git a/pyproject.toml b/pyproject.toml index 1034b26..877ef58 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -63,17 +63,13 @@ classifiers = [ test = ["pytest>=7.2"] coverage = ["mqt.qubomaker[test]", "pytest-cov>=4"] docs = [ - "furo>=2023.08.17", - "sphinx>=7,<9", - "setuptools-scm>=8", + "furo>=2023.9.10", + "setuptools-scm>=8.1", "sphinxcontrib-bibtex>=2.4.2", - "sphinx-copybutton", - "sphinx-hoverxref", - "pybtex>=0.24", - "ipython", + "sphinx-copybutton>=0.5", "ipykernel", "nbsphinx", - "sphinxext-opengraph", + "sphinxext-opengraph>=0.9", "sphinx-autodoc-typehints", "qiskit[visualization]", ] From fecd7b5ef5ea38ec56703dcf8283d17e52487f5f Mon Sep 17 00:00:00 2001 From: burgholzer Date: Thu, 10 Oct 2024 15:50:14 +0200 Subject: [PATCH 10/16] =?UTF-8?q?=F0=9F=94=A7=20update=20lint=20nox=20sess?= =?UTF-8?q?ion?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- noxfile.py | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/noxfile.py b/noxfile.py index 9afaecc..0875e28 100644 --- a/noxfile.py +++ b/noxfile.py @@ -4,6 +4,7 @@ import argparse import os +import shutil from typing import TYPE_CHECKING import nox @@ -30,12 +31,11 @@ @nox.session(reuse_venv=True) def lint(session: nox.Session) -> None: - """Lint the Python part of the codebase using pre-commit. + """Run the linter.""" + if shutil.which("pre-commit") is None: + session.install("pre-commit") - Simply execute `nox -rs lint` to run all configured hooks. - """ - session.install("pre-commit") - session.run("pre-commit", "run", "--all-files", *session.posargs) + session.run("pre-commit", "run", "--all-files", *session.posargs, external=True) def _run_tests( From de15bdf68b0a51fbd3103c089553de5787270356 Mon Sep 17 00:00:00 2001 From: burgholzer Date: Thu, 10 Oct 2024 16:02:09 +0200 Subject: [PATCH 11/16] =?UTF-8?q?=E2=AC=86=EF=B8=8F=20update=20numpy=20dep?= =?UTF-8?q?endency?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- pyproject.toml | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 877ef58..b1e2cad 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -23,8 +23,9 @@ dependencies = [ "importlib_resources>=5.0; python_version < '3.10'", "qiskit>=1.0.0", "joblib>=1.3.2", - "numpy>=1.26.4,<3.0; python_version > '3.11'", # some of our dependencies are not yet compatible with numpy 2.0 - "numpy>=1.26.0,<2.0; python_version <= '3.11'", # some of our dependencies are not yet compatible with numpy 2.0 + "numpy>=1.26; python_version >= '3.12'", + "numpy>=1.24; python_version >= '3.11'", + "numpy>=1.22", "sympy>=1.13.1", "matplotlib>=3.9.0; python_version > '3.11'", "matplotlib>=3.7.0; python_version <= '3.11'", From 82e0d79a2ffd15f0576dfd655079f9181e5b290a Mon Sep 17 00:00:00 2001 From: burgholzer Date: Thu, 10 Oct 2024 16:03:02 +0200 Subject: [PATCH 12/16] =?UTF-8?q?=F0=9F=94=A5=20remove=20obsolete=20warnin?= =?UTF-8?q?g=20filter?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- pyproject.toml | 1 - 1 file changed, 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index b1e2cad..625686a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -96,7 +96,6 @@ xfail_strict = true filterwarnings = [ "error", "ignore:.*invalid escape sequence.*::.*docplex.*", - "ignore:.*Qiskit with Python 3.8.*:DeprecationWarning:", ] [tool.coverage] From 9c95d8fd628ec82eea4b5b4f14b399ec2530a089 Mon Sep 17 00:00:00 2001 From: burgholzer Date: Thu, 10 Oct 2024 16:05:03 +0200 Subject: [PATCH 13/16] =?UTF-8?q?=F0=9F=94=A7=20update=20ruff=20config?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .pre-commit-config.yaml | 4 +--- pyproject.toml | 1 - 2 files changed, 1 insertion(+), 4 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 6140c71..1844d3b 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -62,9 +62,7 @@ repos: hooks: - id: ruff args: ["--fix", "--show-fixes"] - types_or: [python, pyi, jupyter] - id: ruff-format - types_or: [python, pyi, jupyter] # Also run Black on examples in the documentation - repo: https://github.com/adamchainz/blacken-docs @@ -83,7 +81,7 @@ repos: rev: v1.11.2 hooks: - id: mypy - files: ^(src|tests|setup.py) + files: ^(src|tests|noxfile.py) args: [] additional_dependencies: - importlib_resources diff --git a/pyproject.toml b/pyproject.toml index 625686a..f64c75d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -123,7 +123,6 @@ ignore_missing_imports = true [tool.ruff] line-length = 120 -extend-include = ["*.ipynb"] preview = true unsafe-fixes = true From a9900a2e2986ffdbec1c4af1e1bcb0c0b0a6baf7 Mon Sep 17 00:00:00 2001 From: burgholzer Date: Thu, 10 Oct 2024 16:13:58 +0200 Subject: [PATCH 14/16] =?UTF-8?q?=E2=9C=8F=EF=B8=8F=20use=20crates-ci/typo?= =?UTF-8?q?s=20instead=20of=20codespell?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .pre-commit-config.yaml | 8 ++++---- notebooks/tsp.ipynb | 4 ++-- pyproject.toml | 11 +++++++++++ src/mqt/qubomaker/__init__.py | 2 +- src/mqt/qubomaker/qubo_generator.py | 4 ++-- 5 files changed, 20 insertions(+), 9 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 1844d3b..f5f41e1 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -44,11 +44,10 @@ repos: - id: rst-inline-touching-normal # Check for spelling - - repo: https://github.com/codespell-project/codespell - rev: v2.3.0 + - repo: https://github.com/crate-ci/typos + rev: v1.26.0 hooks: - - id: codespell - args: ["-L", "wille,linz", "--skip", "*.ipynb"] + - id: typos # Format configuration files with prettier - repo: https://github.com/rbubley/mirrors-prettier @@ -94,6 +93,7 @@ repos: - tsplib95 - types-Pillow - referencing + - nox # Catch common capitalization mistakes - repo: local diff --git a/notebooks/tsp.ipynb b/notebooks/tsp.ipynb index 093e968..cf20234 100644 --- a/notebooks/tsp.ipynb +++ b/notebooks/tsp.ipynb @@ -48,7 +48,7 @@ "source": [ "### Parameters\n", "\n", - "We begin by setting up our paramters for the QUBOGenerator. The `PathFindingQUBOGenerator` supports the following parameters:\n", + "We begin by setting up our parameters for the QUBOGenerator. The `PathFindingQUBOGenerator` supports the following parameters:\n", "\n", "- `encoding_type`: One of `ONE_HOT`, `DOMAIN_WALL`, or `BINARY`. the encoding for the binary variables in the QUBO formulation.\n", "- `n_paths`: The number of paths to be searched.\n", @@ -379,7 +379,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "_Find the shortest paths $\\pi_1$ and $\\pi_2$ from $s_p$ to $t_p$ respectively that don't interesect_" + "_Find the shortest paths $\\pi_1$ and $\\pi_2$ from $s_p$ to $t_p$ respectively that don't intersect_" ] }, { diff --git a/pyproject.toml b/pyproject.toml index f64c75d..09138ff 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -191,3 +191,14 @@ isort.required-imports = ["from __future__ import annotations"] [tool.ruff.lint.pydocstyle] convention = "google" + + +[tool.typos] +default.extend-ignore-re = [ + '"id": ".*",', + "(?Rm)^.*(#|//)\\s*spellchecker:disable-line$", # ignore line + "(?s)(#|//)\\s*spellchecker:off.*?\\n\\s*(#|//)\\s*spellchecker:on", # ignore block + "NDArray", +] +[tool.typos.default.extend-words] +wille = "wille" diff --git a/src/mqt/qubomaker/__init__.py b/src/mqt/qubomaker/__init__.py index 39f51b5..d1b81b0 100644 --- a/src/mqt/qubomaker/__init__.py +++ b/src/mqt/qubomaker/__init__.py @@ -1,6 +1,6 @@ """A package for generating QUBO formulations automatically from a set of constraints QUBOs for different problem classes. -It allows users to create a `QUBOGenerator` object, and graudally add penalty terms and constraints to it. +It allows users to create a `QUBOGenerator` object, and gradually add penalty terms and constraints to it. When done, the object can be used to construct a QUBO formulation of the project on multiple granularity levels. ## Available Subpackages diff --git a/src/mqt/qubomaker/qubo_generator.py b/src/mqt/qubomaker/qubo_generator.py index 8e833b1..54ffc82 100644 --- a/src/mqt/qubomaker/qubo_generator.py +++ b/src/mqt/qubomaker/qubo_generator.py @@ -140,8 +140,8 @@ def __simplify_auxiliary_variables(expression: sp.Expr, auxiliary_dict: dict[sp. """ if not isinstance(expression, sp.Mul): return expression - used_auxilliaries = {term for term in expression.args if term in auxiliary_dict.values()} - redundant_variables = {term for term in auxiliary_dict if auxiliary_dict[term] in used_auxilliaries} + used_auxiliaries = {term for term in expression.args if term in auxiliary_dict.values()} + redundant_variables = {term for term in auxiliary_dict if auxiliary_dict[term] in used_auxiliaries} remaining_variables = [arg for arg in expression.args if arg not in redundant_variables] return sp.Mul(*remaining_variables) if len(remaining_variables) > 1 else remaining_variables[0] From 3da5a8206ba4d144539e31e5765d96e885e8820d Mon Sep 17 00:00:00 2001 From: burgholzer Date: Thu, 10 Oct 2024 16:25:23 +0200 Subject: [PATCH 15/16] =?UTF-8?q?=F0=9F=94=A7=20update=20release=20drafter?= =?UTF-8?q?=20template?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .github/release-drafter.yml | 12 +++++------- 1 file changed, 5 insertions(+), 7 deletions(-) diff --git a/.github/release-drafter.yml b/.github/release-drafter.yml index 5160768..35b663a 100644 --- a/.github/release-drafter.yml +++ b/.github/release-drafter.yml @@ -6,6 +6,7 @@ categories: - "feature" - "enhancement" - "usability" + - "refactor" - title: "🐛 Bug Fixes" labels: - "bug" @@ -13,21 +14,22 @@ categories: - title: "📄 Documentation" labels: - "documentation" - - title: "🤖 CI" - labels: - - "continuous integration" - title: "📦 Packaging" labels: - "packaging" - title: "🧹 Code Quality" labels: - "code quality" + - title: "🤖 CI" + labels: + - "continuous integration" - title: "⬆️ Dependencies" collapse-after: 5 labels: - "dependencies" - "submodules" - "github_actions" + - "pre-commit" change-template: "- $TITLE @$AUTHOR (#$NUMBER)" change-title-escapes: '\<*_&' version-resolver: @@ -41,10 +43,6 @@ version-resolver: labels: - "patch" default: patch -autolabeler: - - label: "dependencies" - title: - - "/update pre-commit 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