From e7b39683f60bf43ab23505e7002bd8fc62e4e085 Mon Sep 17 00:00:00 2001
From: Daniel Peter <daniel.peter22@gmail.com>
Date: Tue, 3 Dec 2019 16:47:39 +0300
Subject: [PATCH] updates scripts

---
 EXAMPLES/homogeneous_acoustic/create_adjoint_sources.sh  | 9 +++++----
 .../README_kernel                                        | 4 +++-
 .../create_adjoint_sources.sh                            | 5 +++--
 .../README_kernel                                        | 2 ++
 utils/Cluster/lsf/go_mesher_solver_lsf_basin.kernel      | 2 +-
 5 files changed, 14 insertions(+), 8 deletions(-)

diff --git a/EXAMPLES/homogeneous_acoustic/create_adjoint_sources.sh b/EXAMPLES/homogeneous_acoustic/create_adjoint_sources.sh
index 6a1a25fb4..871ff5863 100755
--- a/EXAMPLES/homogeneous_acoustic/create_adjoint_sources.sh
+++ b/EXAMPLES/homogeneous_acoustic/create_adjoint_sources.sh
@@ -72,13 +72,14 @@ cd SEM/
 # checks exit code
 if [[ $? -ne 0 ]]; then exit 1; fi
 
-if [ ! -e $sta.$compx.$en.adj ]; then echo "error creating adjoint sources, please check..."; exit 1; fi
+if [ ! -e $sta.$compx.adj ]; then echo "error creating adjoint sources, please check..."; exit 1; fi
 echo
 
+# renames
 # (acoustic adjoint sources are read from component 1 -> MXX.adj)
-mv -v $sta.$compx.$en.adj $sta.$compx.adj
-mv -v $sta.$compy.$en.adj $sta.$compy.adj
-mv -v $sta.$compz.$en.adj $sta.$compz.adj
+#mv -v $sta.$compx.$en.adj $sta.$compx.adj
+#mv -v $sta.$compy.$en.adj $sta.$compy.adj
+#mv -v $sta.$compz.$en.adj $sta.$compz.adj
 
 # create STATIONS_ADJOINT file with adjoint source location
 fgrep $station ../DATA/STATIONS > ./STATIONS_ADJOINT
diff --git a/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/README_kernel b/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/README_kernel
index 020de38ac..37b63e631 100644
--- a/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/README_kernel
+++ b/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/README_kernel
@@ -63,9 +63,11 @@ step-by-step kernel tutorial:
    - make designated directory for adjoint sources:
      > mkdir SEM/
      > mv OUTPUT_FILES/*.adj SEM/
+
+     in case needed, rename to have ending .adj:
      > cd SEM/
      > rename .semd.adj .adj *.adj
-(on some linux machines, the last line may be rename 's/.semd.adj/.adj/' *.adj)
+      (on some linux machines, the last line may be rename 's/.semd.adj/.adj/' *.adj)
 
      this should create the files:
           SEM/DB.X20.BXX.adj
diff --git a/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/create_adjoint_sources.sh b/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/create_adjoint_sources.sh
index 295e0f66c..a59dcc293 100755
--- a/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/create_adjoint_sources.sh
+++ b/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/create_adjoint_sources.sh
@@ -15,9 +15,10 @@ cd SEM/
 # checks exit code
 if [[ $? -ne 0 ]]; then exit 1; fi
 
-if [ ! -e X20.DB.BXZ.semd.adj ]; then echo "error creating adjoint sources, please check..."; exit 1; fi
+if [ ! -e X20.DB.BXZ.adj ]; then echo "error creating adjoint sources, please check..."; exit 1; fi
 
-rename .semd.adj .adj *semd.adj
+# renames
+#rename .semd.adj .adj *semd.adj
 
 cd ../
 
diff --git a/EXAMPLES/homogeneous_halfspace_HEX8_elastic_no_absorbing/README_kernel b/EXAMPLES/homogeneous_halfspace_HEX8_elastic_no_absorbing/README_kernel
index 1c4908f3d..9cb3ba8fb 100644
--- a/EXAMPLES/homogeneous_halfspace_HEX8_elastic_no_absorbing/README_kernel
+++ b/EXAMPLES/homogeneous_halfspace_HEX8_elastic_no_absorbing/README_kernel
@@ -59,6 +59,8 @@ step-by-step kernel tutorial:
    - make designated directory for adjoint sources:
      > mkdir OUTPUT_FILES/SEM/
      > mv OUTPUT_FILES/*.adj OUTPUT_FILES/SEM/
+
+     in case needed, rename to have ending .adj:
      > cd OUTPUT_FILES/SEM/
      > rename .semd.adj .adj *.adj
 
diff --git a/utils/Cluster/lsf/go_mesher_solver_lsf_basin.kernel b/utils/Cluster/lsf/go_mesher_solver_lsf_basin.kernel
index fb0e561eb..87204db42 100755
--- a/utils/Cluster/lsf/go_mesher_solver_lsf_basin.kernel
+++ b/utils/Cluster/lsf/go_mesher_solver_lsf_basin.kernel
@@ -38,7 +38,7 @@ cd $current_pwd/OUTPUT_FILES/SEM
 collect_seismo_lsf_multi.pl $current_pwd/OUTPUT_FILES/lsf_machines $current_pwd/DATA/Par_file
 #xcut_velocity 29.0 32.5 3 GSC*.semd
 xcreate_adjsrc_traveltime 29.0 32.5 3 GSC*.semd
-rename .semd.adj .adj *.semd.ad
+#rename .semd.adj .adj *.semd.ad
 cd $current_pwd
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