- Move all scripts into
code
folder - Solve bug in
make_graphs.R
: (no limit on max cells)
- Added two additional tags that report base quality of Cell Barcode (XQ) and UMI (Xq)
- Removed separate
barcode.txt
file which is now hard-coded into the script
split_bam.py
: a script to create separate bam files for every single cell. (requires simplesam)