From 1fe16e3291a415f93ca2d89d5ca3fea91100bd4b Mon Sep 17 00:00:00 2001
From: Bento007 <trent.smith007@gmail.com>
Date: Tue, 14 Jan 2025 16:06:56 -0800
Subject: [PATCH] use dask threads schedule with default values.

This is faster an reducues the over head of maintaining the dask configuration
---
 cellxgene_schema_cli/cellxgene_schema/validate.py | 10 ++--------
 cellxgene_schema_cli/requirements.txt             |  2 +-
 2 files changed, 3 insertions(+), 9 deletions(-)

diff --git a/cellxgene_schema_cli/cellxgene_schema/validate.py b/cellxgene_schema_cli/cellxgene_schema/validate.py
index 7da436e2..a08f4ba1 100644
--- a/cellxgene_schema_cli/cellxgene_schema/validate.py
+++ b/cellxgene_schema_cli/cellxgene_schema/validate.py
@@ -2130,14 +2130,8 @@ def validate(
     validator = Validator(
         ignore_labels=ignore_labels,
     )
-    with dask.config.set(
-        {
-            "num_workers": n_workers,
-            "threads_per_worker": 1,
-            "distributed.worker.memory.limit": "6GB",
-            "scheduler": "threads",
-        }
-    ):
+
+    with dask.config.set({"scheduler": "threads"}):
         validator.validate_adata(h5ad_path)
         logger.info(f"Validation complete in {datetime.now() - start} with status is_valid={validator.is_valid}")
 
diff --git a/cellxgene_schema_cli/requirements.txt b/cellxgene_schema_cli/requirements.txt
index c9498aa7..10663d52 100644
--- a/cellxgene_schema_cli/requirements.txt
+++ b/cellxgene_schema_cli/requirements.txt
@@ -2,7 +2,7 @@ anndata==0.11.2
 cellxgene-ontology-guide==1.3.0 # update before a schema migration
 click<9
 Cython<4
-dask==2024.12.0
+dask[array]==2024.12.0
 numpy<3
 pandas>2,<3
 PyYAML<7