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cellxgene-schema CLI must validate Sus scrofa and descendants #1222

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brianraymor opened this issue Jan 28, 2025 · 0 comments
Open

cellxgene-schema CLI must validate Sus scrofa and descendants #1222

brianraymor opened this issue Jan 28, 2025 · 0 comments
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5.3 Next minor CELLxGENE schema version after 5.2 curation software orthologous

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@brianraymor
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Please see schema 5.3.0 for full requirements.

schema v5.3.0

  • Required Gene Annotations
    • Added Sus scrofa Sscrofa11.1 (GCA_000003025.6) Ensembl 113
  • obs (Cell metadata)
    • Updated the requirements for organism_ontology_term_id to limit its values to a list of NCBITaxon terms
  • var and raw.var (Gene Metadata)
    • Updated feature_reference to include STRONGLY RECOMMENDED requirements and warning for current organisms with orthologous gene references:
      • Sus scrofa and its descendants
@brianraymor brianraymor added 5.3 Next minor CELLxGENE schema version after 5.2 curation software orthologous labels Jan 28, 2025
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