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Hello there I'm running the Finder package that used oLego. I'm having this error message :
Error: input 2 720: Wrong XA format. The oLego indices output files are :
output (truncated by me now): [BWTIncConstructFromPacked] 10 iterations done. 100000000 characters processed. [BWTIncConstructFromPacked] 20 iterations done. 200000000 characters processed. .... [BWTIncConstructFromPacked] 260 iterations done. 2592871792 characters processed. [bwt_gen] Finished constructing BWT in 268 iterations. [BWTIncConstructFromPacked] 10 iterations done. 100000000 characters processed. .... [BWTIncConstructFromPacked] 260 iterations done. 2592871792 characters processed. [bwt_gen] Finished constructing BWT in 268 iterations.
And the error file : [bwa_index] Pack FASTA... 40.48 sec [bwa_index] Reverse the packed sequence... 6.98 sec [bwa_index] Construct BWT for the packed sequence... [bwa_index] 1950.65 seconds elapse. [bwa_index] Construct BWT for the reverse packed sequence... [bwa_index] 1986.00 seconds elapse. [bwa_index] Update BWT... 10.03 sec [bwa_index] Update reverse BWT... 9.97 sec [bwa_index] Construct SA from BWT and Occ... 411.52 sec [bwa_index] Construct SA from reverse BWT and Occ... 457.09 sec
Can you help ? Best David
The text was updated successfully, but these errors were encountered:
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Hello there
I'm running the Finder package that used oLego. I'm having this error message :
output (truncated by me now):
[BWTIncConstructFromPacked] 10 iterations done. 100000000 characters processed.
[BWTIncConstructFromPacked] 20 iterations done. 200000000 characters processed.
....
[BWTIncConstructFromPacked] 260 iterations done. 2592871792 characters processed.
[bwt_gen] Finished constructing BWT in 268 iterations.
[BWTIncConstructFromPacked] 10 iterations done. 100000000 characters processed.
....
[BWTIncConstructFromPacked] 260 iterations done. 2592871792 characters processed.
[bwt_gen] Finished constructing BWT in 268 iterations.
And the error file :
[bwa_index] Pack FASTA... 40.48 sec
[bwa_index] Reverse the packed sequence... 6.98 sec
[bwa_index] Construct BWT for the packed sequence...
[bwa_index] 1950.65 seconds elapse.
[bwa_index] Construct BWT for the reverse packed sequence...
[bwa_index] 1986.00 seconds elapse.
[bwa_index] Update BWT... 10.03 sec
[bwa_index] Update reverse BWT... 9.97 sec
[bwa_index] Construct SA from BWT and Occ... 411.52 sec
[bwa_index] Construct SA from reverse BWT and Occ... 457.09 sec
Can you help ?
Best
David
The text was updated successfully, but these errors were encountered: