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Wrong XA format #9

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Dalhte opened this issue Dec 7, 2023 · 0 comments
Open

Wrong XA format #9

Dalhte opened this issue Dec 7, 2023 · 0 comments

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@Dalhte
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Dalhte commented Dec 7, 2023

Hello there
I'm running the Finder package that used oLego. I'm having this error message :

Error: input 2 720: Wrong XA format.
The oLego indices output files are :

output (truncated by me now):
[BWTIncConstructFromPacked] 10 iterations done. 100000000 characters processed.
[BWTIncConstructFromPacked] 20 iterations done. 200000000 characters processed.
....
[BWTIncConstructFromPacked] 260 iterations done. 2592871792 characters processed.
[bwt_gen] Finished constructing BWT in 268 iterations.
[BWTIncConstructFromPacked] 10 iterations done. 100000000 characters processed.
....
[BWTIncConstructFromPacked] 260 iterations done. 2592871792 characters processed.
[bwt_gen] Finished constructing BWT in 268 iterations.

And the error file :
[bwa_index] Pack FASTA... 40.48 sec
[bwa_index] Reverse the packed sequence... 6.98 sec
[bwa_index] Construct BWT for the packed sequence...
[bwa_index] 1950.65 seconds elapse.
[bwa_index] Construct BWT for the reverse packed sequence...
[bwa_index] 1986.00 seconds elapse.
[bwa_index] Update BWT... 10.03 sec
[bwa_index] Update reverse BWT... 9.97 sec
[bwa_index] Construct SA from BWT and Occ... 411.52 sec
[bwa_index] Construct SA from reverse BWT and Occ... 457.09 sec

Can you help ?
Best
David

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