v2.5.5

Full Changelog: v2.5.0...v2.5.5

v2.5.0

Changelog since last "release".

(2.5.0)

• Apptainer support. New profiles for apptainer or conda use.
• Abricate supported in report (ncbi, card, plasmidfinder, vfdb).
• Add updated demo with Strachan Campylobacter

(2.4.1)

• Adjusting the new report and fix minor bugs

(2.4.0)

• New report based on child sections

Full Changelog: v2.3.0...v2.5.0

v2.3.0

New features:

• GC
• GTDB-tk
• new report subpipeline
• Not using drmaa
• Not supporting singularity (but the dockerfiles are still pointed at)
• Ready for implementing differential resources for varying number of input assemblies

Only minor bugs to fix

assemblycomparator2 is ready for rolling!

This version supports a local setup, but also a slurm-singularity based HPC setup.
The report works as well.
I will think about generating the report as a checkpoint rule instead though.

v2.0.0 alpha release

Most things work. But some testing - especially with singularity - is still needed.

"Works"

The core works fine and has been tested and used in production.

But many more features are needed.