DESCRIPTION

Package: hooke
Title: Differential analysis of cell counts in single-cell experiments
Version: 0.0.1
Authors@R: 
    person(given = "Madelein",
           family = "Duran",
           role = c("aut", "cre"),
           email = "duran@uw.edu")
    person(given = "Cole",
           family = "Trapnell",
           role = c("aut", "cre"),
           email = "coletrap@uw.edu")
Description: Hooke models abundances of different cell types and how they change in single-cell genomics experiments.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
LinkingTo: 
    Rcpp
Depends:
    Biobase, 
    monocle3,
    PLNmodels
Imports:
    assertthat (>= 0.2.1),
    batchelor,
    BiocGenerics (>= 0.28.0),
    dplyr (>= 0.8.0.1),
    ggplot2 (>= 3.1.1),
    ggrepel (>= 0.8.1),
    grr,
    igraph (>= 1.2.4),
    Matrix (>= 1.2-17),
    methods,
    purrr (>= 0.3.2),
    RColorBrewer,
    Rcpp (>= 1.0.1),
    S4Vectors,
    stringr (>= 1.4.0),
    tibble (>= 2.1.1),
    tidyr (>= 0.8.3),
    viridis (>= 0.5.1),
    maxmatching,
    Rgraphviz,
    ggnetwork,
    tidygraph,
    ggforce,
    ggnewscale
Suggests: 
    testthat (>= 2.1.0),
    pryr (>= 0.1.4),
    knitr,
    rmarkdown,
    spelling
VignetteBuilder: knitr
Language: en-US