From b1bcaa23a622a6662da62a54ac1a39cca051313c Mon Sep 17 00:00:00 2001
From: costero-e <orildsaga@gmail.com>
Date: Thu, 16 Feb 2023 17:56:06 +0100
Subject: [PATCH] added reindex.py

---
 beacon/reindex.py | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)
 create mode 100644 beacon/reindex.py

diff --git a/beacon/reindex.py b/beacon/reindex.py
new file mode 100644
index 0000000..20c707c
--- /dev/null
+++ b/beacon/reindex.py
@@ -0,0 +1,28 @@
+from pymongo.mongo_client import MongoClient
+import conf
+
+
+client = MongoClient(
+        "mongodb://{}:{}@{}:{}/{}?authSource={}".format(
+            conf.database_user,
+            conf.database_password,
+            conf.database_host,
+            conf.database_port,
+            conf.database_name,
+            conf.database_auth_source,
+        )
+    )
+
+
+client.beacon.analyses.create_index([("$**", "text")])
+client.beacon.biosamples.create_index([("$**", "text")])
+client.beacon.cohorts.create_index([("$**", "text")])
+client.beacon.datasets.create_index([("$**", "text")])
+client.beacon.genomicVariations.create_index([("$**", "text")])
+client.beacon.individuals.create_index([("$**", "text")])
+client.beacon.runs.create_index([("$**", "text")])
+
+#collection_name = client.beacon.analyses
+#print(collection_name.index_information())
+
+