prtest.yaml

name: pr-test

on:
  issue_comment:
    types: [created]

jobs:
  test-check:
    runs-on: ubuntu-latest
    steps:
      - name: vet commenter 
        id: vet
        if: github.event.comment.user.login != 'cellistigs'
        run: exit 1
      - name: acknowledge test request to commenter
        id: check
        uses: khan/pull-request-comment-trigger@master
        with:
          trigger: "#test:"
          prefix_only: true
          reaction: rocket
        env:
          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
      - name: check outputs      
        run: echo ${{ steps.check.outputs.triggered }}

    outputs:
      triggered: ${{ steps.check.outputs.triggered }}
      comment_body: ${{ github.event.comment.body }}

  test:
    runs-on: ubuntu-latest
    needs: test-check
    if: needs.test-check.outputs.triggered == 'true'
    steps:
      - name: get pull request ref
        id: get_pull_request_ref
        uses: octokit/request-action@v2.1.0
        with:
          route: GET /repos/{owner}/{repo}/pulls/{issue_id}
          owner: cunningham-lab
          repo: neurocaas
          repository: ${{ github.repository }}
          issue_id: ${{ github.event.issue.number }}
        env:
          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"

      - name: create test
        id: create_test
        uses: octokit/request-action@v2.1.0
        with:
          route: POST /repos/{owner}/{repo}/deployments
          owner: cunningham-lab
          repo: neurocaas
          repository: ${{ github.repository }}
          ref: ${{ fromJson(steps.get_pull_request_ref.outputs.data).head.ref }}
          environment: dev
          auto_merge: false
        env:
          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"

      - name: set test status to in progress
        id: start_test
        uses: octokit/request-action@v2.1.0
        with:
          route: POST /repos/{owner}/{repo}/deployments/{deployment}/statuses
          owner: cunningham-lab
          repo: neurocaas
          repository: ${{ github.repository }}
          deployment: ${{ fromJson(steps.create_test.outputs.data).id }}
          environment: dev
          environment_url: https://example.com
          log_url: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}
          state: in_progress
          mediaType: '{"previews": ["flash", "ant-man"]}'
        env:
          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"

      - name: get stack name 
        uses: jungwinter/split@v1
        id: split
        with:
          msg: "#test:test-tags-bucket" #${{ needs.test-check.outputs.comment_body }}
          seperator: ':'
          
      - name: Use the master repo to test.   
        uses: actions/checkout@v2
        with:                    
           persist-credentials: false
           ref: ${{ fromJson(steps.get_pull_request_ref.outputs.data).base.sha }}


      - name: setup python.
        uses: actions/setup-python@v2
        with:
          python-version: 3.8

      # Log in to docker hub. 
      - name: Login to Docker Hub
        uses: docker/login-action@v1
        with:  
          username: ${{ secrets.DOCKER_HUB_USERNAME }}
          password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} 
          
      # Configure AWS credentials. 
      - name: Configure AWS Credentials
        uses: aws-actions/configure-aws-credentials@v1
        with:
          aws-access-key-id: ${{ secrets.DEPLOY_AWS_ACCESS_KEY_ID }}
          aws-secret-access-key: ${{ secrets.DEPLOY_AWS_SECRET_ACCESS_KEY }}
          # aws-session-token: ${{ secrets.AWS_SESSION_TOKEN }} # if you have/need it
          aws-region: us-east-1

      - name: Install Repo.
        run: |
          cd $GITHUB_WORKSPACE
          wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
          bash miniconda.sh -b -p $HOME/miniconda
          source "$HOME/miniconda/etc/profile.d/conda.sh"
          hash -r
          conda config --set always_yes yes --set changeps1 no
          conda update -q conda
          conda config --append envs_dirs $HOME/miniconda/envs 
          conda create -n neurocaas
          conda activate neurocaas
          python -m pip install --upgrade pip
          pip install -r requirements.txt
          pip install aws-sam-cli==0.53.0 
          pip install localstack==0.12.3
          pip install ./ 
          sudo apt-get install jq    
          
      - name: Test stack
        run: |
          cd ncap_iac/ncap_blueprints
          source "$HOME/miniconda/etc/profile.d/conda.sh"
          conda activate neurocaas
          bash iac_utils/fulltest.sh ${{ steps.split.outputs._1 }}     
          
      - name: Set test status to success
        id: successful_test
        uses: octokit/request-action@v2.x
        with:
          route: POST /repos/{owner}/{repo}/deployments/{deployment}/statuses 
          owner: cunningham-lab
          repo: neurocaas
          repository: ${{ github.repository }}
          deployment: ${{ fromJson(steps.create_test.outputs.data).id }}
          environment: dev
          environment_url: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}
          log_url: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}
          mediaType: '{"previews": ["ant-man"]}'
          state: success
        env:
          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"

      - name: set test status to failure
        id: failed_test
        uses: octokit/request-action@v2.x
        if: failure()
        with:
          route: POST /repos/{owner}/{repo}/deployments/{deployment}/statuses
          owner: cunningham-lab
          repo: neurocaas
          repository: ${{ github.repository }}
          deployment: ${{ fromJson(steps.create_test.outputs.data).id }}
          environment: dev
          environment_url: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}
          log_url: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}
          mediaType: '{"previews": ["ant-man"]}'
          state: failure
        env:
          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"