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The SQLT development is extremely understaffed at this point, so we will need your help. Please turn the program in question into a proper test case - model it on the many diff tests already available in the repo. For example t/30sqlt-new-diff-sqlite.t
I am a bit off IRC at the moment, but yes - as far as I know (from a cursory look) this issue is still a problem. Run the gisted script, and if it fails - please do convert it to a test.
https://gist.github.com/1152817 is a short program that takes 2 simple MySQL tables and outputs invalid SQL when trying to diff them.
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