diff --git a/NAMESPACE b/NAMESPACE index ffa1c6b..6c5c4e0 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -145,7 +145,6 @@ export(sample_cells) export(sort_features) export(top_deg) import(Biobase, except = combine) -import(Matrix) import(SeuratObject) import(SingleCellExperiment) import(SummarizedExperiment, except = Assays) @@ -155,6 +154,8 @@ import(tibble) import(tidyr) importFrom(ComplexHeatmap,Heatmap) importFrom(ComplexHeatmap,columnAnnotation) +importFrom(GenomeInfoDb,standardChromosomes) +importFrom(Matrix,t) importFrom(Seurat,FindClusters) importFrom(Seurat,FindNeighbors) importFrom(Seurat,FindVariableFeatures) diff --git a/R/scmisc-package.R b/R/scmisc-package.R index 289722a..d0e432e 100644 --- a/R/scmisc-package.R +++ b/R/scmisc-package.R @@ -4,7 +4,9 @@ # The following block is used by usethis to automatically manage # roxygen namespace tags. Modify with care! ## usethis namespace: start -#' @import tibble dplyr tidyr ggplot2 SingleCellExperiment SeuratObject Matrix +#' @import tibble dplyr tidyr ggplot2 SingleCellExperiment SeuratObject +#' @importFrom Matrix t +#' @importFrom GenomeInfoDb standardChromosomes #' @importFrom readr read_tsv #' @importFrom forcats fct_inseq #' @importFrom patchwork wrap_plots plot_layout