diff --git a/.Rbuildignore b/.Rbuildignore index 11bb817..d2107f2 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -2,3 +2,4 @@ ^LICENSE\.md$ ^.*\.Rproj$ ^\.Rproj\.user$ +^\.github$ diff --git a/.github/.gitignore b/.github/.gitignore new file mode 100644 index 0000000..2d19fc7 --- /dev/null +++ b/.github/.gitignore @@ -0,0 +1 @@ +*.html diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml new file mode 100644 index 0000000..f442d99 --- /dev/null +++ b/.github/workflows/R-CMD-check.yaml @@ -0,0 +1,83 @@ +on: + push: + branches: + - master + pull_request: + branches: + - master + +name: R-CMD-check + +jobs: + R-CMD-check: + runs-on: ${{ matrix.config.os }} + + name: ${{ matrix.config.os }} (${{ matrix.config.r }}) + + strategy: + fail-fast: false + matrix: + config: + - {os: windows-latest, r: '3.6'} + - {os: macOS-latest, r: '3.6'} + - {os: macOS-latest, r: 'devel'} + - {os: ubuntu-16.04, r: '3.2', rspm: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"} + - {os: ubuntu-16.04, r: '3.3', rspm: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"} + - {os: ubuntu-16.04, r: '3.4', rspm: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"} + - {os: ubuntu-16.04, r: '3.5', rspm: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"} + - {os: ubuntu-16.04, r: '3.6', rspm: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"} + + env: + R_REMOTES_NO_ERRORS_FROM_WARNINGS: true + RSPM: ${{ matrix.config.rspm }} + + steps: + - uses: actions/checkout@v2 + + - uses: r-lib/actions/setup-r@master + with: + r-version: ${{ matrix.config.r }} + + - uses: r-lib/actions/setup-pandoc@master + + - name: Query dependencies + run: | + install.packages('remotes') + saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) + shell: Rscript {0} + + - name: Cache R packages + if: runner.os != 'Windows' + uses: actions/cache@v1 + with: + path: ${{ env.R_LIBS_USER }} + key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('.github/depends.Rds') }} + restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}- + + - name: Install system dependencies + if: runner.os == 'Linux' + env: + RHUB_PLATFORM: linux-x86_64-ubuntu-gcc + run: | + Rscript -e "remotes::install_github('r-hub/sysreqs')" + sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") + sudo -s eval "$sysreqs" + + - name: Install dependencies + run: | + remotes::install_deps(dependencies = TRUE) + remotes::install_cran("rcmdcheck") + shell: Rscript {0} + + - name: Check + env: + _R_CHECK_CRAN_INCOMING_REMOTE_: false + run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") + shell: Rscript {0} + + - name: Upload check results + if: failure() + uses: actions/upload-artifact@master + with: + name: ${{ runner.os }}-r${{ matrix.config.r }}-results + path: check diff --git a/README.Rmd b/README.Rmd index fd4f073..71e21af 100644 --- a/README.Rmd +++ b/README.Rmd @@ -12,8 +12,14 @@ knitr::opts_chunk$set( out.width = "100%" ) ``` + # scmisc + + [![R build status](https://github.com/ddiez/scmisc/workflows/R-CMD-check/badge.svg)](https://github.com/ddiez/scmisc/actions) + + + The goal of scmisc is to provide a common interface for several single cell packages. ## Installation diff --git a/README.md b/README.md index 7a72dd6..8d38260 100644 --- a/README.md +++ b/README.md @@ -3,6 +3,12 @@ # scmisc + + +[![R build +status](https://github.com/ddiez/scmisc/workflows/R-CMD-check/badge.svg)](https://github.com/ddiez/scmisc/actions) + + The goal of scmisc is to provide a common interface for several single cell packages.