From 0457d63917167b2c84b93e9218be929b1cbc5ff3 Mon Sep 17 00:00:00 2001 From: Diego Vaca Date: Fri, 29 Mar 2024 20:47:33 +0000 Subject: [PATCH] sub-grid bubble model --- examples/3D_bubblescreen/case.py | 255 ++++ .../3D_bubblescreen/convert_particlesData.m | 47 + examples/3D_bubblescreen/input/particles.dat | 1194 +++++++++++++++++ src/post_process/m_particles_output.fpp | 6 +- src/simulation/m_data_output.fpp | 2 +- src/simulation/m_kernel_functions.fpp | 2 +- src/simulation/m_particles.fpp | 7 +- src/simulation/m_particles_types.fpp | 2 +- 8 files changed, 1503 insertions(+), 12 deletions(-) create mode 100644 examples/3D_bubblescreen/case.py create mode 100644 examples/3D_bubblescreen/convert_particlesData.m create mode 100644 examples/3D_bubblescreen/input/particles.dat diff --git a/examples/3D_bubblescreen/case.py b/examples/3D_bubblescreen/case.py new file mode 100644 index 000000000..690116bfe --- /dev/null +++ b/examples/3D_bubblescreen/case.py @@ -0,0 +1,255 @@ +#!/usr/bin/env python3 + +import math +import json + +# Overview: A planar acoustic wave interacts with a bubble cloud in water. + +# Reference length - m +x0 = 1.e-03 + +# Reference density - kg/m3 +rho0 = 1.e+03 + +# Reference speed of sound - m/s +c0 = 1475. + +# Reference pressure - Pa +p0 = rho0*c0*c0 + +# Reference temperature - K +T0 = 298 + +# Gamma +Gam = 7.1 + +# pi infinity - Pa +pi_inf = 306.e+06 + +# Atmospheric pressure - Pa +patm = 101325. + + +# Amplitude of the sinusoidal acoustic wave - Pa +pamp = 2*(1.e5) + +# Frequency of the sinusoidal acoustic wave - Hz +freq = 300e+03 + +# Wavelength of the sinusoidal acoustic wave - m +wlen = c0/freq + + +## Properties that govern the dynamics of the lagrangian bubbles + +# Universal gas constant - kJ/mol/K +R = 8314 + +# gamma, gas and vapor +gamma_g = 1.4 +gamma_v = 1.333 + +# vapor pressure of water - Pa +pv = 2350 + +# cp, gas and vapor - kJ/g/K +cp_g = 1.e3 +cp_v = 2.1e3 + +# thermal conductivity, gas and vapor - W/m/K +k_g = 0.025 +k_v = 0.02 + +# Molar weigth, gas and vapor - g/mol +MW_g = 28.0 +MW_v = 18.0 + +# Diffusivity coefficient of the vapor +diffVapor = 2.5e-5 + +# Surface tension of the bubble - N/m +sigBubble = 0.069 + +# Water viscosity - Pa.s +mu_water = 1e-3 + + +## Domain boundaries - m + +# x direction +xb = -2.5e-3 +xe = 2.5e-3 + +# y direction +yb = -2.5e-3 +ye = 2.5e-3 + +# z direction +zb = -12.e-3 +ze = 12.e-3 + +# number of elements into x direction +Nx = 50 + +# number of elements into y direction +Ny = 50 + +# number of elements into z direction +Nz = 500 + +# time-step - sec +dt = 7.5e-9 + +# ============================================================================== + +# Configuring case dictionary +print(json.dumps({ + # Logistics ================================================ + 'run_time_info' : 'T', + # ========================================================== + + # Computational Domain Parameters ========================== + 'x_domain%beg' : xb/x0, + 'x_domain%end' : xe/x0, + 'y_domain%beg' : yb/x0, + 'y_domain%end' : ye/x0, + 'z_domain%beg' : zb/x0, + 'z_domain%end' : ze/x0, + 'stretch_z' : 'T', + 'a_z' : 2.0E-00, + 'z_a' : -2.5, + 'z_b' : 2.5, + 'stretch_y' : 'F', + 'stretch_x' : 'F', + 'm' : Nx, + 'n' : Ny, + 'p' : Nz, + 'dt' : dt*c0/x0, + 't_step_start' : 0, + 't_step_stop' : 3000, + 't_step_save' : 500, + # ========================================================== + + # Simulation Algorithm Parameters ========================== + 'model_eqns' : 2, + 'num_fluids' : 1, + 'num_patches' : 1, + 'adv_alphan' : 'T', + 'mpp_lim' : 'F', + 'time_stepper' : 3, + 'weno_order' : 5, + 'weno_eps' : 1.0E-16, + 'mapped_weno' :'T', + 'riemann_solver' : 2, + 'wave_speeds' : 1, + 'avg_state' : 2, + 'bc_x%beg' :-6, + 'bc_x%end' :-6, + 'bc_y%beg' :-6, + 'bc_y%end' :-6, + 'bc_z%beg' :-6, + 'bc_z%end' :-6, + # ========================================================== + + # Acoustic source ========================================== + 'Monopole' : 'T', + 'num_mono' : 1, + 'Mono(1)%support' : 4, + 'Mono(1)%pulse' : 1, + 'Mono(1)%npulse' : 1, + 'Mono(1)%mag' : pamp/p0, + 'Mono(1)%length' : wlen/x0, + 'Mono(1)%loc(1)' : 0., + 'Mono(1)%loc(2)' : 0., + 'Mono(1)%loc(3)' : -7.E-03/x0, + 'Mono(1)%dir' : 0., + 'Mono(1)%delay' : 0., + # ========================================================== + + # Formatted Database Files Structure Parameters ============ + 'format' : 1, + 'precision' : 2, + 'prim_vars_wrt' :'T', + 'c_wrt' :'T', + 'parallel_io' :'T', + 'fd_order' : 1, + 'omega_wrt(3)' :'T', + 'rho_wrt' :'T', + 'mom_wrt' :'T', + 'E_wrt' :'T', + 'gamma_wrt' :'T', + 'heat_ratio_wrt' :'T', + 'pi_inf_wrt' :'T', + 'probe_wrt' :'T', + 'num_probes' : 2, + 'probe(1)%x' : 0., + 'probe(1)%y' : 0., + 'probe(1)%z' : 0., + 'probe(2)%x' : 0., + 'probe(2)%y' : 0., + 'probe(2)%z' : -6.E-03/x0, + # ========================================================== + + # Patch 1: Water (left) ==================================== + 'patch_icpp(1)%geometry' : 9, + 'patch_icpp(1)%x_centroid' : 0., + 'patch_icpp(1)%y_centroid' : 0., + 'patch_icpp(1)%z_centroid' : 0., + 'patch_icpp(1)%length_x' : 2*(xe-xb)/x0, + 'patch_icpp(1)%length_y' : 2*(ye-yb)/x0, + 'patch_icpp(1)%length_z' : 2*(ze-zb)/x0, + 'patch_icpp(1)%vel(1)' : 0., + 'patch_icpp(1)%vel(2)' : 0., + 'patch_icpp(1)%vel(3)' : 0., + 'patch_icpp(1)%pres' : patm/p0, + 'patch_icpp(1)%alpha_rho(1)' : 1., + 'patch_icpp(1)%alpha(1)' : 1., + # ========================================================== + + # Lagrangian Particles (bubbles) =========================== + 'particleflag' : 'T', + 'avgdensFlag' : 'T', + 'particleoutFlag' : 'T', + 'particlestatFlag' : 'F', + 'RPflag' : 'T', + 'clusterflag' : '3', + 'stillparticlesflag' : 'T', + 'heatflag' : 1, + 'massflag' : 1, + 'csonref' : c0, + 'rholiqref' : rho0, + 'Lref' : x0, + 'Tini' : T0, + 'Runiv' : R, + 'gammagas' : gamma_g, + 'gammavapor' : gamma_v, + 'pvap' : pv, + 'cpgas' : cp_g, + 'cpvapor' : cp_v, + 'kgas' : k_g, + 'kvapor' : k_v, + 'MWgas' : MW_g, + 'MWvap' : MW_v, + 'diffcoefvap' : diffVapor, + 'sigmabubble' : sigBubble, + 'viscref' : mu_water, + 'RKeps' : 1.E-05, + 'ratiodt' : 1, + 'projectiontype' : 0, + 'smoothtype' : 1, + 'epsilonb' : 1.33, + 'coupledFlag' : 'T', + 'solverapproach' : 2, + 'correctpresFlag' : 'T', + 'charwidth' : 5.0, + 'valmaxvoid' : 0.9, + 'dtmaxpart' : 0.0, + # ========================================================== + + # Fluids Physical Parameters =============================== + 'fluid_pp(1)%gamma' : 1.0/(Gam-1.0), + 'fluid_pp(1)%pi_inf' : Gam*(pi_inf/p0)/(Gam-1.0), + # ========================================================== + })) + +# ============================================================================== diff --git a/examples/3D_bubblescreen/convert_particlesData.m b/examples/3D_bubblescreen/convert_particlesData.m new file mode 100644 index 000000000..54832abc4 --- /dev/null +++ b/examples/3D_bubblescreen/convert_particlesData.m @@ -0,0 +1,47 @@ +% Post-processing the particle file +% Author: Kazuki Maeda +% 09/01/2018 + +close all +clear all +clc + +crd=pwd(); + +mkdir('m_data_particles'); + +% Time stepping information follows .py input files +%%%%%%%%%%%%USER INPUTS%%%%%%%%%%%%%%%%%%%%%%%%% +t_step_start=0; +t_step_save=50; +t_step_stop=3000; + +%%%%%%%%%%%%USER INPUTS%%%%%%%%%%%%%%%%%%%%%%%% + +j=1; +for i=t_step_start:t_step_save:t_step_stop + filename = sprintf('./particles_data/particles_data%d.dat',i) + tmp=sortrows(load(filename)); + data(j).part(:,1:4)=tmp(:,1:4); + data(j).part(:,5:6)=tmp(:,11:12); + data(j).part(:,7)=tmp(:,22); + j=j+1; +end + +% data(i).part(j,k) includes data of j-th particle in i-th output file. +% k=1 : ID +% k=2:4 : spatial coordinate +% k=5 : radius +% k=6 : radial velocity +% k=7 : time + +cd('./m_data_particles'); + +filename=strcat('particles_data.mat'); +save('-V7.3',filename,'data'); +cd('../'); + +clear data; + +cd(crd); + diff --git a/examples/3D_bubblescreen/input/particles.dat 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0.000000 + -1.795980 -0.853900 1.888090 0.000000 0.000000 0.000000 0.010000 0.000000 + -0.697684 -1.984350 2.020820 0.000000 0.000000 0.000000 0.010000 0.000000 + 0.342119 0.302609 1.600530 0.000000 0.000000 0.000000 0.010000 0.000000 + 2.289240 -0.843349 -1.873550 0.000000 0.000000 0.000000 0.010000 0.000000 + -0.433131 -1.264670 -0.282314 0.000000 0.000000 0.000000 0.010000 0.000000 + 1.162070 -1.831550 -0.075527 0.000000 0.000000 0.000000 0.010000 0.000000 + 1.872820 0.537043 1.111320 0.000000 0.000000 0.000000 0.010000 0.000000 + -1.128590 -0.762600 1.444800 0.000000 0.000000 0.000000 0.010000 0.000000 diff --git a/src/post_process/m_particles_output.fpp b/src/post_process/m_particles_output.fpp index 814813ba2..2960f3f9b 100644 --- a/src/post_process/m_particles_output.fpp +++ b/src/post_process/m_particles_output.fpp @@ -191,8 +191,8 @@ MODULE m_particles_output INTEGER :: ifile, ireq, ierr, data_size, tot_data INTEGER :: i - INTEGER :: dumN1 - REAL(KIND(0.D0)) :: dumR1, dumR2 + INTEGER :: dmN1 + REAL(KIND(0.D0)) :: dmR1, dmR2 IF(num_procs >1 ) THEN PRINT '(A)', ' particle output does not support MPI. Exiting ...' @@ -206,7 +206,7 @@ MODULE m_particles_output IF (file_exist) THEN IF(proc_rank .EQ. 0) THEN OPEN(9, FILE = TRIM(file_loc), FORM = 'unformatted', STATUS = 'unknown') - READ(9) dumN1, dumR1, dumR2, tot_step + READ(9) dmN1, dmR1, dmR2, tot_step CLOSE(9) END IF ELSE diff --git a/src/simulation/m_data_output.fpp b/src/simulation/m_data_output.fpp index 02e0cb2b1..ab5954101 100644 --- a/src/simulation/m_data_output.fpp +++ b/src/simulation/m_data_output.fpp @@ -1683,7 +1683,7 @@ contains !CALL SYSTEM('mkdir -p ' // TRIM(t_step_dir)) - !fixme: deleting the exsiting particle data + !fixme: deleting the existing particle data !CALL SYSTEM('rm -rf ' // TRIM(t_step_dir) // '/q_cons_vf', & ! adv_idx%end+1, '.dat') diff --git a/src/simulation/m_kernel_functions.fpp b/src/simulation/m_kernel_functions.fpp index a939b633f..70f149b7e 100644 --- a/src/simulation/m_kernel_functions.fpp +++ b/src/simulation/m_kernel_functions.fpp @@ -790,7 +790,7 @@ MODULE m_kernel_functions L2 = center(2)**2d0+nodecoord(2)**2d0-2d0*center(2)*nodecoord(2)*COS(theta) distance = DSQRT(auxvect(1)**2d0+L2) - ! Cell fases for dpdx and dudx + ! Cell faces for dpdx and dudx L2_zp = center(2)**2d0+node_zp(2)**2d0-2d0*center(2)*node_zp(2)*COS(theta) dist_zp = DSQRT(auxv_zp(1)**2d0+L2_zp) L2_zm = center(2)**2d0+node_zm(2)**2d0-2d0*center(2)*node_zm(2)*COS(theta) diff --git a/src/simulation/m_particles.fpp b/src/simulation/m_particles.fpp index 274565198..9a0e0b5f9 100644 --- a/src/simulation/m_particles.fpp +++ b/src/simulation/m_particles.fpp @@ -73,7 +73,7 @@ MODULE m_particles CALL s_populate_variables_buffers(q_cons_vf,q_particle) ELSE CALL s_populate_variables_buffers(q_cons_vf) - !IF (We_size > 0 .AND. (We_riemann_flux .OR. We_rhs_flux)) THNE + !IF (We_size > 0 .AND. (We_riemann_flux .OR. We_rhs_flux)) THEN !CALL s_account_for_capillary_potential_energy(q_cons_ts(1)%vf) !END IF END IF @@ -703,7 +703,6 @@ MODULE m_particles REAL(KIND(0.D0)) :: qtime INTEGER :: i,j,k,l,nparticles LOGICAL :: file_exist,indomain - real(kind(0.d0)) :: dumx CALL s_populate_variables_buffers(q_cons_vp, q_particle) @@ -744,10 +743,6 @@ MODULE m_particles IF (file_exist) THEN OPEN(unit=85,file='input/particles.dat',form='formatted') 101 READ(85 ,*,end=102) (inputparticle(i), i=1,8) - !SAME BUBBLE DISTRIBUTION IF MONOPOLE COMES IN THE Z DIR - !dumx = inputparticle(1) - !inputparticle(1) = inputparticle(3) - !inputparticle(3) = dumx indomain = particle_in_domain(inputparticle(1:3)) CALL get_part_id IF (indomain) THEN diff --git a/src/simulation/m_particles_types.fpp b/src/simulation/m_particles_types.fpp index 9786c9df2..a27c517d4 100644 --- a/src/simulation/m_particles_types.fpp +++ b/src/simulation/m_particles_types.fpp @@ -423,7 +423,7 @@ MODULE m_particles_types SUBROUTINE get_psi (coord,psi,cell) ! this subroutine returns the local psi coordinates - ! it also gives the cell with respect these coodinates are defined + ! it also gives the cell with respect these coordinates are defined REAL(KIND(0.D0)), DIMENSION(3), INTENT(IN) :: coord REAL(KIND(0.D0)), DIMENSION(3) :: psi !local coordinates