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SHAV_Macaca_Germany_2021_only_CDS.gb
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LOCUS SHAV/Macaca/Germany/2021 7490 bp DNA linear UNA 15-FEB-2023
DEFINITION Simian hepatitis A virus isolate SHAV/Macaca/Germany/2021, complete
genome.
ACCESSION
VERSION .
KEYWORDS .
SOURCE Simian hepatitis A virus (SHAV)
ORGANISM Simian hepatitis A virus (SHAV)
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Picornaviridae; Heptrevirinae; Hepatovirus.
REFERENCE 1 (bases 1 to 7490)
FEATURES Location/Qualifiers
source 1..7490
/organism="Simian hepatitis A virus"
/mol_type="genomic RNA"
/isolation_source="blood sample of Cynomolgus macaque"
/host="Macaca fascicularis"
/db_xref="taxon:12101"
/country="Germany"
/collection_date=2021
CDS 728..7411
/standard_name="HAVgp1"
ORIGIN
1 ttcaagaggg gttcccagat ttttctggga tccctcttgg gagtccatgg tgaggggact
61 tgatacctca ccgccgtttg cctaggctat aggcttcccc tttttccttt cccttcctaa
121 cccctttatt gtgtatatat taatttctgc aggttcagag ttcttaatat gttccacttt
181 atggacactc attttcacgc tttctgtctt ctttgttttc ctgggctctc cccttgccca
241 aggctctggc cgttgcgccc ggcggggtca actccatgat tagcatggag ctgtaggagt
301 ctaaactggg gacacagatg ttgagaacgt caccttgcag tgttaacttg gcatttatga
361 atctctttga tcttccacaa gaggtaggct acgggtgaaa cctcttaggt taatactttt
421 ataaagagat actttggata gggtaacagc ggtggatatt ggtgagttct ttatggacaa
481 aaaccattca acaccggagg actggctctc atccagtgga tgcattgagt ggactaaatg
541 tcagggctgt ctctaggctt aattcttgac ctctctgtgc ttagggcaaa tcaaactttg
601 gccttaaatg gaactctgtg agagggggtt cctccttttc atgctggaca tgttttgggg
661 ccttttggtt tgatttgctc ctgaggtact caggggcatt taggtttttc ctcactaaaa
721 tgatataatg agtatggcta agcaagggtt gtttcagact gtgggcagtg gtttagacca
781 cattctttcc ctagctgatg tagaggagga acagatgatt cagtcagttg atagaacagc
841 tgtgactggg gcttcatatt ttacctctgt tgatcaatct tcagttcata ctgctgaggt
901 tggatcccat cagtcagaac cattaaaaac ttcagttgat aagcctggtt ctaagaagac
961 acagggtgag aagttttttc ttatccattc agccgattgg ctgactacac atgctttatt
1021 tcatgaagtt gccaaacttg atgtggttag tttgctgtac aatgagcaat ttgcagtgca
1081 agggttgttg agataccaca cttatgctag atttggaata gagattcaag tccagataaa
1141 tccaacccct tttcaacaag gaggacttat ttgtgccatg gttcctggag atcaaggtta
1201 tggttctatt gcttccctta ccgtttatcc acatggtttg ttaaattgta atatcaataa
1261 tgtggttaga atcaaagttc catttatata tactagggga gcttatcatt ttaaggatcc
1321 tcaatatcct gtttgggagt tgacaattag agtttggtca gagttaaata ttgggactgg
1381 aacctcagca tacacatcat tgaatgtttt ggctagattt actgaccttg aactccatgg
1441 tctaaccccg ttatcaactc agatgatgag gaatgaattt agggtgagca caactgaaaa
1501 tgttgttaat ctttctaact atgaagatgc acgagcaaaa atgtcatttg cattggacca
1561 agagaattgg agatctgatc catcagaagg gggaggtatt aaaattacac atttctccac
1621 atggacatct ataccaaccc tggctgccca gtttgctttt aatgcttcag cctctgtggg
1681 tcaacaaata aaagttatac cagttgaccc ctatttttat cagatgacaa attcaaaccc
1741 tgatcagaag tgcattaccg ccttggcttc aatatgtcag atgttttgtt tttggagggg
1801 agacttggtt tttgattttc aggtttttcc cacaaaatat cattcaggga gattgttatt
1861 ttgttttgta ccaggaaatg agttaataga tgtgtcttct ataacattga aacaagcaac
1921 aactgctcca tgtgctgtga tggatattac aggagttcaa tctacattga ggtttcgtgt
1981 tccctggatt tcagatactc cttatagagt caatcgttac acgaaatctt cacatcaaaa
2041 aggtgagtac acagcaatag ggaagttgat tgtgtactgt tacaatagac tgacttctcc
2101 ttccaatgtt gcatctcatg tcagagttaa tgtttatttg tctgccatta atttggaatg
2161 ttttgctcct ttgtatcatg ccatggatgt aacatcccaa actggagatg actcaggggg
2221 tttttcaact acagtttcca ctgaacaaaa tgttccagac cctcaggttg gtatcacaac
2281 tccaaaggat ctgaaaggaa gagctaataa aggaaagatg gatgtttctg gggtacaagc
2341 cccagttgga gctataacaa caatagagga tcctgttctt gccaagaaag ttcctgaaac
2401 tttcccagag ttgaaacctg gagaatcccg acatacatca gatcacatgt ctgtgtataa
2461 atttatggga aggtcacatt tcctttgcac atttacattc aatgcaaata atagagaata
2521 tacttttcca attactttgt cgtccacttc aaatcctcca catgggcttc catccacttt
2581 gagatggttt tttaatttgt tccagcttta caggggccca ttggatttga ccatcattat
2641 tactggagct actgatgtcg atgggatggc ttggtttaca cctgttggtt tagctgtgga
2701 tactccttgg gtagagaaac aatctgcact aacaattgat tataagacag ctctaggggc
2761 tattagattt aatacaagaa gaactggcaa cattcaaata agattgcctt ggtactccta
2821 cctttatgct gtgtcaggcg ctttagatgg acttggagac acaactgatt ctacttttgg
2881 tctggtttct atacaaattg caaactataa tcattctgat gagtacttgt ccttcagctg
2941 ttatttgtct gttacagaac aatctgaatt tttctttcct agggctcctt tgaattcaag
3001 tgctatgatg acttctgaga ccatgttaga tagaattgct ggaggtgatc ttgagtcctc
3061 agtggatgat cctcggtcag atgaggatcg aagatttgag agtcacattg aaagaaaacc
3121 atataaagag ctgagattgg aagttggtaa gcagagattg aaatatgcta aagaggaatt
3181 atcaaatgaa attctgcccc ctcccaggaa gatgaaggga ttgttttcac agtctaagat
3241 ttctcttttt tatgctgaag atcatgaaat tattaagctt tcttggaaag gtctttcggc
3301 agacactaga gctttgcgca gatatggttt ttctttggct gcaggtagga gtgtctggac
3361 actagagatg gattcaggag ttctcacagg aaggcttgtc agacttgctg atgagaattg
3421 gactgaaatt aaggatgata aaattgtttc tttagtggag aaattcacat caaataagaa
3481 ttggtctaaa gtgaaatttc cccatggaat gatggacttg gaagaaatag cagcaaactc
3541 tcaagaattt ccaaatatgt ctgaggcaga attaggcttt cttttgcatt ggttgaatcc
3601 aaagaaaata aatcttgctg acaggatgtt ggggctttct ggtgttaaag aaatcaagga
3661 acagagtgtt ggtttattgt cagagtgcaa gacattcttg gactcaatag ctggaacatt
3721 aaaggcaatg atgtttggtt tccatcagtc agttactgta gaaattatca atactgttct
3781 ttgttttctt aaaggtggta ttctccttta tgtaatgcaa caacttgata aaaatgaaca
3841 ttcacacata attggacttt tacaagtgat gaattatgct gatattggct gttcagttat
3901 ttcatgtggg aaaatttttt ccaaaatgtt ggagactgtt ttcaactggc aaatggactc
3961 cagaatgttg gcattgagat cccagagttt ttcaaactgg cttcgagatg tttgttcagg
4021 aattacaatc ttcaagaatt ttaaggatgc aatattctgg ttgtatacca aattgaaaac
4081 ctattatgat gacaactatg gactcggtaa agatgtcctt aatgccttaa aggaaaatca
4141 aagtaggatt gagaaggcaa ttgaagaggc tgaccaattc tgtgtgattc aaatccagga
4201 tgtagaaaag tctgagcaat atcagaaagg gattgatctt attaaaaaac tgagaactgt
4261 ccattcgttg gctcaagttg attcttcttt gtctgttcat ctttctcctt tgagagattg
4321 catctctcgg gttcatcaaa agttgaaaaa tcttggttct attaatcagg ctatggtgac
4381 tagatgtgaa cctgttgtgt gttatctaca tggtaagaga ggagggggaa aaagtttgac
4441 atcaattgcc ttagccacaa agatttgtaa gcactatggt gttgaacctg aaaagaacat
4501 ctacacaaag cctgttgctt cagattactg ggatggctat agtggtcaat tagtgtgcat
4561 tatagatgac attggacaaa ataccactga tgaggattgg tctgattttt gtcaattagt
4621 ttcagggtgt ccaatgagat tgaacatggc ctctattgaa gaaaaaggaa gacatttttc
4681 ctctccattc attatagcta cttcaaattg gtcgaatcct agtcctaaaa cagtgtatgt
4741 gaaggaagct attgatcgta ggctgcatta caaggttgag gttaaacctg cctcctttta
4801 taagaatgta cataatgaca tgttgaatgt tggtttggca aaaaataatg atgctatcaa
4861 agatatgtct tgtgttgatt tgaccatgga cggtcactct atttcactgc ttgacctgtt
4921 aaactccctg attatgacag ttgaaattag gaaacaaaat atgtcagaat ttatgaggtt
4981 gtggtctcaa ggagtttcag aatatgataa tactgacatt gttggagagt ttttccaatc
5041 ttttccttca ggtgacccat cagggtccaa attaacgaac ttttttaaag cagtaactaa
5101 tcacaaatgg attgctgtag gtgcagctgt tggaatcttg ggaattcttg ttggtggttg
5161 gtttgtgtat aaacatttta ccaaaaaaga ggatgagccc attccaagtg gtgggattta
5221 tcatggagtt tccaaaccta agcaagtgat taagttagat gctgatcctg ctgagtctca
5281 atccactttg gaaattgctg gtttagttag aaagaatttg gtccaatttg gagtgggtga
5341 gaagaatggg tgtgttagat gggttatgaa tgccttggga gtaaaagatg attggcttct
5401 tgtgccatct catgcatata aatttgagaa ggattatgaa atgatggaat tctattttaa
5461 tagaggtggc acatattatt ctatttctgc tggtaatgtt gtcattcagt cactagatgt
5521 tggtttccag gatgtggttt taatgaaggt tccaacgatc cccaaattta gagacataac
5581 agagcatttt atcaagaaaa gtgatgtgcc tagggcactt aatagattgg ctactttagt
5641 tactactgtc aatgggactc caatgttgat ttcagaaggt cctctcaaaa tggaagaaaa
5701 agcaacatat gtccataaga gaaatgatgg aactactgta gagttgactg tggatcaagc
5761 ttggagagga aaaggagaag gtttggctgg aatgtgtgga ggggctttag tttcctctaa
5821 tcagtcaatt cagaatgcaa ttttaggaat tcatgtggct ggtggaaatt caattctagt
5881 tgctaaatta gtcacccagg aaatgtttca gaacattgaa cagagagtta ttgaaagtca
5941 gagaataatg aaagtggagt ttactcagtg ttcagtgaat gtggtctcca aaacgctttt
6001 taaaaagagt ccaattcacc atcacattga taaggacatg attaattatc ctgctgtgat
6061 gcctttctct aaggctgaga ttgatcctat ggctgttatg ctttccaagt attcattgcc
6121 tattgtggat gagcccgaag ggtatagaga agcttcaatc tttttccaga ataaaatttt
6181 aggcaaaaca tttttggttg atgattttct ggatgtggat atggcaataa ctggagctcc
6241 aggtattgat gccattaata tggattcttc tcctggtttt ccatatgttc aggagcaatt
6301 atctaaaaga gacttgattt ggttagatga taatggaatg ttcttggggc ttcaccctcg
6361 tttagcacaa agaatattgt acaatacagt gatgatggaa aattgttcag atctagatgt
6421 tgtttttaca acttgtccta aagatgaatt gaggtccatt gacaaggttc tagagtccaa
6481 aactagggct atagatgctt gtccccttga ttatactatt ctatgtagaa tttattgggg
6541 ccctgcaata agctattttc aattgaatcc aggttttcat actggtgtgg ccattggcat
6601 tgatcctgat agacattggg atgaactgtt taaaactatg atcaggtttg gtgatgttgg
6661 tcttgatttg gatttttcct catttgatgc tagcttgagt ccgtttatga tcagagaagc
6721 tggtagaatt ttgagtgaaa tgtctaagac ccctgaacat tttgggaagg ctttaatcaa
6781 caccattata tattctaagc acttgttata caattgttgt tatcatgttt atggatctat
6841 gccatctggt tctccatgta cagcactttt gaattctatt gtgaacaatg tgaatttata
6901 ctatgtgttc tctagaattt ttaaaaagtc tccagttttc ttttccgagg ctttgaggat
6961 tctatgctat ggggatgatg tcctcattgt tttttccaga aaggttcaaa ttgaaaattt
7021 ggacaatatt ggacaaagga ttgttgaaga atttaagaag ctgggaatgg tagctacttc
7081 agcagataaa gggattccta aattgaaacc tgtctcagaa ctgaccttct tgaagagatc
7141 ttttaatttg gtggaagata gagtgagacc tgcaatagct gagaagacaa tatggtcttt
7201 agtggcttgg aaaagaagta atgctgaatt tgaacagaat cttgagaatg ctcagtggtt
7261 tgccttcatg catggctatg agttttatca aaaattttat catttcattc agtcttgttt
7321 ggatcgtgaa atgttagatt ataagttgaa gtcttatgaa tggtggagaa tgaaatttaa
7381 tgatcagtgt ttcatttgtg acctttcatg acttgcttaa acaaattttc ttaaaatttc
7441 tgtgatttgt ttattctatg tttacagtaa awaaaaaaaa aaaaaaaaaa
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