chelicerate_GO

GO term analysis for chelicerates

files and directories

• clupro/ - some figures and analysis using clusterprofiler (another GO term tool)
  • gene_GO.py - script to make files with gene and GO terms
  • run_cluscomp.R - script to run clusterprofiler
  • run_make_TERM2GENE.sh - wrapper to run gene_GO.py
• go_anno/ - lists of gene and GO terms for topGO comparison
• go_anno_for_GOCOMPASS/ - list for running GOCAMPASS web app that is for inter species GO comparison
• ips_out/ - IPS results that have GO term annotation
• ohno_list/ - ohnolog gene lists
• run_ips.sh - script to run interproscan (change paths)
• run_make_mcscanx_lists.sh - script to make lists of gene from different classes (change paths)
• run_make_ohno_lists.sh - script to make lists of gene from different ohnolig runs (change paths)
• run_topGO.R - script to run topGO for within species comparison
• run_topGO.sh - script wrapper for run_topGO.R