From 2e3e46f46f1c505e97308242581980a433549922 Mon Sep 17 00:00:00 2001
From: Eddie Ruiz <32622519+Ed2uiz@users.noreply.github.com>
Date: Tue, 7 Feb 2023 16:18:44 -0500
Subject: [PATCH] Update bin_size arg options

---
 R/interoperability.R | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/R/interoperability.R b/R/interoperability.R
index 77a738d4f..b73ac6933 100644
--- a/R/interoperability.R
+++ b/R/interoperability.R
@@ -17,7 +17,7 @@
 #'
 #' See SAW pipeline for additional information about the gef file.
 #' @export
-gefToGiotto = function(gef_file, bin_size = 'bin100', verbose = TRUE){
+gefToGiotto = function(gef_file, bin_size = '100', verbose = TRUE){
 
    # data.table vars
    genes = NULL
@@ -27,7 +27,7 @@ gefToGiotto = function(gef_file, bin_size = 'bin100', verbose = TRUE){
    if(!file.exists(gef_file)) stop('File path to .gef file does not exist')
 
    # check if proper bin_size is selected. These are determined in SAW pipeline.
-   bin_size_options = c('bin1', 'bin10', 'bin20', 'bin50', 'bin100', 'bin200')
+   bin_size_options = c('1', '10', '20', '50', '100', '200')
    if(!(bin_size %in% bin_size_options)) stop('Please select valid bin size,
                                               see details for choices.')