From 8be522dc335330423fb049f1ef9d5c8c556d4491 Mon Sep 17 00:00:00 2001 From: RubD Date: Sat, 10 Oct 2020 15:30:18 -0400 Subject: [PATCH] change to non deprecated functions --- R/spatial_interaction_visuals.R | 22 +++++++++++----------- 1 file changed, 11 insertions(+), 11 deletions(-) diff --git a/R/spatial_interaction_visuals.R b/R/spatial_interaction_visuals.R index 9c2dbbb00..3f1dcb73e 100644 --- a/R/spatial_interaction_visuals.R +++ b/R/spatial_interaction_visuals.R @@ -1171,17 +1171,17 @@ plotCellProximityGenes = function(gobject, ## first filter - filter_cpg = filterCellProximityGenes(cpgObject = cpgObject, - min_cells = min_cells, - min_cells_expr = min_cells_expr, - min_int_cells = min_int_cells, - min_int_cells_expr = min_int_cells_expr, - min_fdr = min_fdr, - min_spat_diff = min_spat_diff, - min_log2_fc = min_log2_fc, - min_zscore = min_zscore, - zscores_column = zscores_column, - direction = direction) + filter_cpg = filterInteractionChangedGenes(cpgObject = cpgObject, + min_cells = min_cells, + min_cells_expr = min_cells_expr, + min_int_cells = min_int_cells, + min_int_cells_expr = min_int_cells_expr, + min_fdr = min_fdr, + min_spat_diff = min_spat_diff, + min_log2_fc = min_log2_fc, + min_zscore = min_zscore, + zscores_column = zscores_column, + direction = direction) complete_part = filter_cpg[['CPGscores']]