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DESCRIPTION
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Package: GiottoVisuals
Title: Visuals for the Giotto spatial biology analysis ecosystem
Version: 0.2.12
Authors@R: c(
person("Ruben", "Dries", email = "[email protected]",
role = c("aut", "cre"), comment = c(ORCID = "0000-0001-7650-7754")),
person("Jiaji", "George Chen", email = "[email protected]",
role = c("aut")),
person("Guo-Cheng", "Yuan", email = "[email protected]",
role = c("aut")),
person("Matthew", "O'Brien", email = "[email protected]",
role = c("aut")),
person("Joselyn C.", "Chávez-Fuentes", email = "[email protected]",
role = c("aut"), comment = c(ORCID = "0000-0002-4974-4591")),
person("Edward", "Ruiz", email = "[email protected]",
role = c("aut"))
)
Description: Expanded visualization and plotting functionality for Giotto Suite.
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://drieslab.github.io/Giotto/, https://github.com/drieslab/Giotto, https://drieslab.github.io/GiottoVisuals/
BugReports: https://github.com/drieslab/Giotto/issues
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends:
R (>= 4.4.1)
Imports:
checkmate,
colorRamp2,
cowplot (>= 0.9.4),
data.table,
ggplot2 (>= 3.1.1),
GiottoUtils (>= 0.1.12),
GiottoClass (>= 0.3.6),
ggrepel,
igraph (>= 1.2.4.1),
methods,
plotly,
scales (>= 1.0.0),
scattermore,
stats,
terra
Suggests:
ComplexHeatmap (>= 1.20.0),
ggalluvial,
ggdendro,
ggforce,
ggraph,
ggsci,
GiottoData,
htmlwidgets,
networkD3,
NineteenEightyR,
nord,
palr,
palettetown,
png,
rcartocolor,
RColorBrewer (>= 1.1-2),
remotes,
scatterpie,
tiff,
viridis,
viridisLite,
wesanderson,
testthat (>= 3.0.0),
knitr,
rmarkdown
Remotes:
drieslab/GiottoUtils,
drieslab/GiottoClass
Config/testthat/edition: 3
Collate:
'aux_defaults.R'
'aux_output.R'
'aux_save.R'
'aux_visuals.R'
'package_imports.R'
'colorRamp2.R'
'color_palettes.R'
'dd.R'
'generics.R'
'gg_annotation_raster.R'
'gg_info_layers.R'
'gg_param.R'
'gg_settings.R'
'globals.R'
'gstop.R'
'mixcolor.R'
'plot_dendrogram.R'
'plot_dotplot.R'
'plot_heatmap.R'
'plot_sankey.R'
'plot_scatter.R'
'plot_violin.R'
'spatialDE_visuals.R'
'suite_reexports.R'
'vis_spatial_gg.R'
'vis_spatial_in_situ.R'
'vis_spatial_plotly.R'
'viz_spatial_network.R'
'zzz.R'
biocViews: Software, Technology, Spatial
VignetteBuilder: knitr