DESCRIPTION

Package: dasper
Title: Detecting abberant splicing events from RNA-sequencing data
Version: 1.11.0
Date: 2021-08-05
Authors@R: c(person(given = "David", family = "Zhang", 
    role = c("aut", "cre"),
    email = "david.zhang.12@ucl.ac.uk",
    comment = c(ORCID = "0000-0003-2382-8460")), 
    person(given = "Leonardo", family = "Collado-Torres",
    role = c("ctb"),
    email = "lcolladotor@gmail.com",
    comment = c(ORCID = "0000-0003-2140-308X")))
Description: The aim of dasper is to detect aberrant splicing events 
  from RNA-seq data. dasper will use as input both junction and 
  coverage data from RNA-seq to calculate the deviation of each 
  splicing event in a patient from a set of user-defined controls. 
  dasper uses an unsupervised outlier detection algorithm to score each 
  splicing event in the patient with an outlier score representing 
  the degree to which that splicing event looks abnormal.
License: Artistic-2.0
URL: https://github.com/dzhang32/dasper
BugReports: https://support.bioconductor.org/t/dasper
biocViews: Software, RNASeq, Transcriptomics, AlternativeSplicing, 
  Coverage, Sequencing
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
Suggests: 
    AnnotationFilter,
    BiocStyle,
    covr,
    ensembldb,
    GenomicState,
    knitr,
    lifecycle,
    markdown,
    recount,
    RefManageR,
    rmarkdown,
    sessioninfo,
    testthat,
    tibble
VignetteBuilder: knitr
Imports: 
    basilisk,
    BiocFileCache,
    BiocParallel,
    data.table,
    dplyr,
    GenomeInfoDb,
    GenomicFeatures,
    GenomicRanges,
    ggplot2,
    ggpubr,
    ggrepel,
    grid,    
    IRanges, 
    magrittr, 
    megadepth,
    methods,
    plyranges, 
    readr,
    reticulate, 
    rtracklayer,
    S4Vectors,
    stringr, 
    SummarizedExperiment,
    tidyr
Depends: 
    R (>= 4.0)
StagedInstall: no
Config/testthat/edition: 3
Config/testthat/parallel: true
PackageStatus: Deprecated