From 54ca8a7361ce047bbec345b08c6db973479bf664 Mon Sep 17 00:00:00 2001 From: Matthew Garner Date: Mon, 17 May 2021 11:31:29 +0100 Subject: [PATCH 1/2] Switched to tested_regions bed for hap.py --- egg4_config.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/egg4_config.py b/egg4_config.py index 8bae978..7b2d1bf 100644 --- a/egg4_config.py +++ b/egg4_config.py @@ -49,8 +49,8 @@ happy_stage_prefix = "{}.prefix".format(happy_stage_id) happy_stage_bed = { - "{}.panel_bed ID".format(happy_stage_id): "file-G2J5ZV0433GQJz7860vb4PB1", - "{}.panel_bed".format(happy_stage_id): "file-G2J5ZV0433GQJz7860vb4PB1" + "{}.panel_bed ID".format(happy_stage_id): "file-G2QZPY04yk4JYG869p7pFZz7", + "{}.panel_bed".format(happy_stage_id): "file-G2QZPY04yk4JYG869p7pFZz7" } multi_stage_input_dict = { From d2a7ac04b6582a0933e0303b08978efc4d6629e1 Mon Sep 17 00:00:00 2001 From: Matt Garner Date: Mon, 17 May 2021 16:43:27 +0100 Subject: [PATCH 2/2] Updated hap.py bed to production version of panelapp_GMS_transcripts_210408.bed --- egg4_config.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/egg4_config.py b/egg4_config.py index 7b2d1bf..004c18f 100644 --- a/egg4_config.py +++ b/egg4_config.py @@ -49,8 +49,8 @@ happy_stage_prefix = "{}.prefix".format(happy_stage_id) happy_stage_bed = { - "{}.panel_bed ID".format(happy_stage_id): "file-G2QZPY04yk4JYG869p7pFZz7", - "{}.panel_bed".format(happy_stage_id): "file-G2QZPY04yk4JYG869p7pFZz7" + "{}.panel_bed ID".format(happy_stage_id): "file-G2V8k90433GVQ7v07gfj0ggX", + "{}.panel_bed".format(happy_stage_id): "file-G2V8k90433GVQ7v07gfj0ggX" } multi_stage_input_dict = {