diff --git a/resources/home/dnanexus/vcf2xls_nirvana.pl b/resources/home/dnanexus/vcf2xls_nirvana.pl index 9fbcdf0e..fa5053f8 100755 --- a/resources/home/dnanexus/vcf2xls_nirvana.pl +++ b/resources/home/dnanexus/vcf2xls_nirvana.pl @@ -962,7 +962,7 @@ sub gene_performance { $worst_exon{ "$RefSeq" }{'1to5'} += range2length($$coverage{'1to5'}); $worst_exon{ "$RefSeq" }{'6to9'} += range2length($$coverage{'6to9'}); $worst_exon{ "$RefSeq" }{'10to19'} += range2length($$coverage{'10to19'}); - $worst_exon{ "$RefSeq" }{'transcript_length'} += $$region{ 'end' }-$$region{ 'start' } + 1 + 10; # 5bp flank * 2 = 10 + $worst_exon{ "$RefSeq" }{'transcript_length'} += $$region{ 'end' }-$$region{ 'start' } + 1; # 0 vs 1 based coordinates $exons{ "$RefSeq" }{ $exon_name }{ 'coverage' } = $coverage; $exons{ "$RefSeq" }{ $exon_name }{ "$RefSeq" }{ 'region' } = $region;