v1.5.2

Changes

• Conversion to app

Bug fixes:

• Pattern matching works when checking if sample is in the manifest
• vcf integrity check fix when the sliced vcf is empty

v1.5.1

• Match sample id for WES with Athena reports

v1.5.0

• Include flanked panel bed as optional input
• Filter vcf using flanked panel bed to restrict other variant to exons +/- 100bp.

v1.4.2

Use semi colon to separate panels/genes for reanalysis

v1.4.1

• Match new genepanels format,
• Summary sheet now displays the clinical indication and the panel with its version

v1.4.0

• Accepts new format of g2t

v1.2.5

Needed for making dias 1.4.1 work

• Remove -q for finding workflow id

v1.3.1

• Removed -q from grep to fix DNAnexus issue of BrokenPipeError

v1.3.0

• Removed QC sheets
• Modified summary sheet to remove report text and moved some fields
• Check if sample in manifest faster (1p saved every time)
• Check if gene in g2t faster (1p saved every time)

v1.2.4

• When running reanalysis, actually bypass the manifest