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use fasta-index tar #28

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kjwinfield opened this issue Feb 28, 2024 · 0 comments

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kjwinfield commented Feb 28, 2024

app currently has four ref genome inputs in the config

.fa.gz
.fai
.gzi
.fasta-index

The fasta-index is unpacked anyway, (code.sh 219-220)

# Unpack fasta reference
	tar xzf $ref_bcftools

It would make sense to just input the fasta-index tar

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