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Makefile_header.mk
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#------------------------------------------------------------------------------
# GEOS-Chem Global Chemical Transport Model #
#------------------------------------------------------------------------------
#BOP
#
# !IROUTINE: Makefile_header.mk
#
# !DESCRIPTION: This sub-makefile defines the variables which specify
# compilation options for the different supported compiler/platform
# combinations. Also, the default makefile compilation rules are specified
# here.
#\\
#\\
# !REMARKS:
# To build the programs, call "make" with the following syntax:
# .
# make -jN TARGET REQUIRED-FLAGS [ OPTIONAL-FLAGS ]
#
# To display a complete list of options, type "make help".
# .
# The following variables are exported to the main-level Makefile:
# .
# Variable Description
# -------- -----------
# CC Contains the default C compilation commands (for PGI only)
# F90 Contains the Fortran compilation commands
# FREEFORM Contains the command to force F90 "free format" compilation
# LD Contains the command to link to libraries & make executable
# LINK Contains the commands to link to GEOS-Chem built libraries
# R8 Contains the command to force REAL -> REAL*8
# SHELL Contains the default Unix shell to use when building code
# NCL Contains the default netCDF library link commands
# .
# FFLAGS is a local variable that is not returned to the "outside world",
# but is only used locally. COMPILER, HDF5, and OMP are all input via the
# command line or via environment variables.
# .
# NOTE: We now use SHELL :=/bin/bash as the default Unix shell. This allows
# us to extend the Makefile ifeq statements so that we can test for more than
# one string. The following example is used to ensure that the met field name
# selected by the user is case-insensitive:
#
# # %%%%% GEOS-FP %%%%%
# REGEXP :=(^[Gg][Ee][Oo][Ss][Ff][Pp])|(^[Gg][Ee][Oo][Ss].[Ff][Pp])
# ifeq ($(shell [[ "$(MET)" =~ $(REGEXP) ]] && echo true),true)
# USER_DEFS += -DGEOS_FP
# endif
# .
# The [[ ]] in bash is an evaluation. The above ifeq statement uses regular
# expressions to test if the MET variable matches the string "GEOS" (case-
# insensitive) and either "FP" or "any character and then a FP". This will
# return true (via the "echo true" statement) for combinations like "GEOS-FP",
# "geosfp", "Geos-FP", "GeOs.FP", etc. This is a robust way of evaluating
# the user's input, and will make errors less likely.
#
# !REVISION HISTORY:
# 16 Sep 2009 - R. Yantosca - Initial version
# 22 Sep 2009 - R. Yantosca - Bug fix, added -I$(HDR) to F90 compilation lines
# 24 Sep 2009 - R. Yantosca - added NONUMA option for PGI compiler
# 07 Oct 2009 - R. Yantosca - Replaced .SUFFIXES section w/ pattern rules
# 19 Nov 2009 - R. Yantosca - Now use OMP variable to determine whether to
# turn on OpenMP parallelization options
# 23 Nov 2009 - R. Yantosca - Now use -module $(MOD) instead of -I$(MOD) to
# specify the directory for *.mod files on both
# IFORT and PGI compilers.
# 23 Nov 2009 - R. Yantosca - Now use -moddir=$(MOD) and -M$(MOD) instead of
# -I$(MOD) to specify the directory for *.mod
# files on the SunStudio compiler.
# 23 Nov 2009 - R. Yantosca - Change DEBUG to allow for new version of
# Totalview which doesn't choke when debugging
# parallel code (Totalview 8.6.1-1)
# 02 Dec 2009 - R. Yantosca - Added SUN32 switch for building 32-bit
# executbable on the SunStudio compiler
# 11 Dec 2009 - R. Yantosca - Now define SHELL here and export to other
# Makefiles, so as to have a single place where
# the Unix shell name is defined.
# 21 Dec 2009 - R. Yantosca - Add H5I and H5L variables to specify the
# HDF5 library and include paths. Also set
# the default to not link to the HDF5 libraries.
# 21 Dec 2009 - R. Yantosca - Now pass LINK back to the outside world, so
# that the Makefile that builds the executable
# can reference it.
# 19 Jan 2010 - R. Yantosca - Minor fix, add -m64 if SUN32 is not defined.
# 25 Jan 2010 - R. Yantosca - Now add -DTOMAS to FFLAGS if necessary
# 28 Jan 2010 - C. Carouge - Add -lIsoropia to LINK, for ISORROPIA II
# 16 Feb 2011 - R. Yantosca - Now add -DAPM to FFLAGS if necessary
# 25 Aug 2011 - R. Yantosca - Add "-fp-model source" to FFLAGS for IFORT
# compiler. This will prevent aggressive
# optimizations from changing numerical results.
# 25 Aug 2011 - R. Yantosca - Add -CU (check for uninit'd variables) to
# FFLAGS when using IFORT w/ the DEBUG option.
# 26 Aug 2011 - R. Yantosca - Allow for deactivation of the "-fp-model source"
# option by using the PRECISE=no env variable
# 24 Jan 2012 - R. Yantosca - If NETCDF=yes, GEOS-Chem will link and include
# to the netCDF dir paths that are specified
# 24 Jan 2012 - R. Yantosca - Now use := for makefile assignment statements
# 10 Feb 2012 - R. Yantosca - When compiling with NETCDF=yes or HDF5=yes,
# we must also add the flags -mcmodel=medium
# -i-dynamic to FFLAGS in order to avoid memory
# errors (for IFORT only)
# 10 Feb 2012 - R. Yantosca - Remove -CU from the DEBUG option (IFORT only)
# 19 Mar 2012 - R. Yantosca - Add optional NO_ISO switch, which will turn off
# the ISORROPIA ATE package for testing
# 05 Apr 2012 - R. Yantosca - Now assume netCDF is always used
# 05 Apr 2012 - R. Yantosca - Change BL_INC_NETCDF to INC_NETCDF
# 05 Apr 2012 - R. Yantosca - Change BL_INC_HDF5 to INC_HDF5
# 05 Apr 2012 - R. Yantosca - Change BL_LIB_NETCDF to LIB_NETCDF
# 05 Apr 2012 - R. Yantosca - Change BL_LIB_HDF5 to LIB_HDF5
# 30 Apr 2012 - R. Yantosca - Add NETCDF3=[yes|no] makefile option
# 30 Apr 2012 - R. Yantosca - Use separate netCDF link and include paths
# for netCDF3 and for netCDF4
# 30 Apr 2012 - R. Yantosca - Also add -mcmodel=medium flag for PGI compiler
# 09 May 2012 - R. Yantosca - Now try to get the proper linking sequence
# for netCDF etc w/ nf-config and nc-config.
# 11 May 2012 - R. Yantosca - Now export NCL (netCDF linking sequence)
# 17 Aug 2012 - R. Yantosca - Now add RRTMG=yes option for RRTMG rad transfer
# 07 Sep 2012 - R. Yantosca - Now add OPT variable to set global opt levels
# 07 Sep 2012 - R. Yantosca - Also set TRACEBACK for PGI compiler
# 17 Apr 2013 - R. Yantosca - Add switch to set -DKPP_SOLVE_ALWAYS, which
# will force KPP to get past nonconvergences
# 25 Feb 2013 - S. Farina - Add flag for TOMAS40
# 22 Apr 2013 - R. Yantosca - TOMAS40=yes option now sets -DTOMAS -DTOMAS40
# 28 Apr 2013 - S. Farina - Add flags for TOMAS15 and TOMAS12
# 13 Aug 2013 - R. Yantosca - Removed "define.h"; now set all GEOS-Chem
# user options via the Make command
# 14 Aug 2013 - R. Yantosca - Now use regular expressions to test the
# validity of command-line inputs
# 21 Aug 2013 - R. Yantosca - Improved error checking for command line inputs
# 26 Aug 2013 - R. Yantosca - Add -debug all as an IFORT debugging option
# 16 Sep 2013 - R. Yantosca - Now set GIGC Cpp switches first. This allows
# us to skip the GRID setting if we are using
# EXTERNAL_GRID=yes or EXTERNAL_FORCING=yes.
# 18 Sep 2013 - M. Long - Add edits for HPC Grid-Indpendent GEOS-Chem
# 26 Sep 2013 - R. Yantosca - MET=geosfp now sets Cpp switch w/ -DGEOS_FP
# 07 Nov 2013 - R. Yantosca - NEST=se to now sets CPP switch w/ -DNESTED_SE
# 08 Nov 2013 - R. Yantosca - Add FPEX flag to avoid conflicting with the
# ESMF/MAPL environment variable FPE
# 24 Feb 2014 - R. Yantosca - Add UCX=yes flag for invoking UCX strat chem
# 18 Mar 2014 - R. Yantosca - Now add TAU_PROF=y flag to invoke TAU profiler
# 19 Mar 2014 - R. Yantosca - Move library link commands after the sections
# that set the C-preprocessor switches
# 19 Mar 2014 - R. Yantosca - Restore GTMM compilation funcitonality
# 19 Mar 2014 - R. Yantosca - Add more visible comment section dividers
# 20 Mar 2014 - R. Yantosca - Bug fix: "+= -DDEBUG" instead of ":= -DDEBUG"
# 09 Jul 2014 - R. Yantosca - Now don't require MET or GRID if target is
# srcdoc, utildoc, gtmmdoc, makedoc, or hemcodoc
# 21 Jul 2014 - R. Yantosca - Update build sequence
# 03 Oct 2014 - R. Yantosca - Now turn on NO_REDUCED=y for hpc target
# 03 Oct 2014 - R. Yantosca - Now compatible with netCDF 4.1.1 or 4.2+
# 17 Oct 2014 - R. Yantosca - Don't require MET or GRID to remove ESMF etc.
# 05 Nov 2014 - R. Yantosca - Will compile w/ 8-byte precision by default
# 14 Nov 2014 - R. Yantosca - Further updates for hpc compilation
# 21 Nov 2014 - R. Yantosca - Add special compilation command for ISORROPIA
# 21 Nov 2014 - R. Yantosca - Add cosmetic changes and indentation
# 06 Jan 2015 - R. Yantosca - Add two-way nesting options from Y. Y. Yan
# 09 Jan 2015 - M. Sulprizio- Now properly link to the RRTMG directory
# 13 Jan 2015 - R. Yantosca - Add fix for GEOS-Chem-Libraries library path
# 08 Apr 2015 - R. Yantosca - Bug fix: set RRTMG=yes if it passes the regexp
# 10 Apr 2015 - R. Yantosca - Export RRTMG_NEEDED var to be used elsewhere
# 10 Apr 2015 - R. Yantosca - Bug fix: -l rad should be -lrad in link var
# 12 May 2015 - R. Yantosca - Bug fix for PGI compiler: remove extra "-"
# in front of $(NC_INC_CMD) in the PGI section
# 12 May 2015 - R. Yantosca - Now use GC_BIN, GC_INCLUDE to point to the
# netCDF library paths and GC_F_BIN, GC_F_INCLUDE
# to point to netCDF-Fortran library paths.
# (In some cases, these are the same).
# 20 May 2015 - R. Yantosca - Test if GC_F_BIN and GC_F_INCLUDE are defined
# as env variables before trying to use them.
# 29 May 2015 - R. Yantosca - Now set KPP_CHEM for KPP. We can't redefine
# the CHEM variable because it is an env var.
# 04 Jun 2015 - R. Yantosca - Now use RRTMG_NO_CLEAN=y or RRTMG_NOCLEAN=y to
# removing RRTMG objects, modules, and libraries.
# 04 Jun 2015 - R. Yantosca - Bug fix: don't turn on UCX except for CHEM=UCX
# 15 Jun 2015 - R. Yantosca - Now define the HEMCO standalone link command
# separately from the GEOS-Chem link command
# 07 Jul 2015 - M. Sulprizio- Add option for CHEM=SOA_SVPOA
# 17 Jul 2015 - E. Lundgren - Remove BSTATIC option when picking pgi options
# for debug run or regular run
# 30 Jul 2015 - M. Yannetti - Added TIMERS.
# 03 Aug 2015 - M. Sulprizio- NEST=cu to now sets CPP switch w/ -DNESTED_CU for
# custom nested grids
# 11 Aug 2015 - R. Yantosca - Add MERRA2 as a met field option
# 24 Aug 2015 - R. Yantosca - Bug fix: Add missing | when testing USER_DEFS
# 07 Dec 2015 - R. Yantosca - Add "realclean_except_rrtmg" target that
# replaces the RRTMG_CLEAN variabe
# 10 Feb 2016 - E. Lundgren - Add BPCH restart file input and output switches
# 11 Feb 2016 - E. Lundgren - Change BPCH to BPCH_DIAG, NETCDF to NC_DIAG
# 12 Jul 2016 - E. Lundgren - Remove binary punch restart file option
# 19 Jul 2016 - R. Yantosca - Add more flags for enabling experimental code
# 20 Sep 2016 - M. Sulprizio- Remove NEST=se option. This grid was never fully
# implemented.
# 12 Dec 2016 - R. Yantosca - Allow gfortran etc. to compile with TAU_PROF=y
# 13 Dec 2016 - R. Yantosca - Add GPROF=y to compile for GNU profiler gprof
# 01 Mar 2017 - R. Yantosca - Bug fix: Make sure NO_REDUCED=no works
# 01 Mar 2017 - R. Yantosca - Set -DNC_HAS_COMPRESSION if the netCDF library
# can write compressed data to disk
# 07 Mar 2017 - R. Yantosca - Replace makefile variable COMPILER with
# COMPILER_FAMILY; also works if FC=mpif90
# 08 May 2017 - R. Yantosca - Add minor fixes to avoid Perl bareword errors
# 23 May 2017 - R. Yantosca - use -dumpversion to get the Gfortran version #
# 24 Aug 2017 - M. Sulprizio- Remove support for GCAP, GEOS-4, GEOS-5 and MERRA
# 03 Jan 2018 - M. Sulprizio- Remove UCX flag. We now solely use Input_Opt%LUCX
# throughout GEOS-Chem.
# 07 Aug 2018 - R. Yantosca - For now, don't compile TOMAS/ APM when NC_DIAG=y
# 21 Aug 2018 - R. Yantosca - Simplify testing for netCDF-Fortran
# 23 Aug 2018 - H.P. Lin - Add NO_EXE=y to inhibit "geos" executable build
# and build libGeosCore.a instead for coupled
# models driving GEOS-Chem externally (by calling
# its libraries)
# 28 Aug 2018 - M. Sulprizio- Export EXE_NEEDED to be used in GeosCore/Makefile
#EOP
#------------------------------------------------------------------------------
#BOC
###############################################################################
### ###
### Set the default Unix shell and some error message variables ###
### ###
###############################################################################
# Set default shell to bash, for use with the Makefile conditionals
SHELL :=/bin/bash
# Error message for bad COMPILER input
ERR_CMPLR :="Unknown Fortran compiler! Must be one of ifort, gfortran, pgfortran|pgi|pgf90, or mpifort|mpif90. Check the FC environment variable in your .bashrc or .cshrc file."
# Error message for unknown compiler/OS combintation
ERR_OSCOMP :="Makefile_header.mk not set up for this compiler/OS combination"
# Error message for bad MET input
ERR_MET :="Select a met field: MET=geosfp, MET=merra2"
# Error message for bad GRID input
ERR_GRID :="Select a horizontal grid: GRID=4x5. GRID=2x25, GRID=05x0625, GRID=025x03125"
# Error message for bad NEST input
ERR_NEST :="Select a nested grid: NEST=as, NEST=ch, NEST=eu, NEST=na, NEST=cu"
# Error message for bad two-way coupled model input (yanyy,6/18/14)
ERR_COUPLECH :="Select a coupled grid for China/SE Asia: COUPLECH=2x25ch, COUPLECH=4x5ch"
ERR_COUPLENA :="Select a coupled grid for North America: COUPLENA=2x25na, COUPLENA=4x5na"
ERR_COUPLEEU :="Select a coupled grid for Europe : COUPLEEU=2x25eu, COUPLEEU=4x5eu"
ERR_COUPLE :="Select a coupled choice: COUPLE=yes"
# Error message for bad GIGC config
ERR_GIGC :="Unable to find the GIGC configuration file. Have you downloaded the GIGC?"
# Error message for TOMAS error message
ERR_MICPHYS :="At present, microphysics packages (TOMAS, APM) cannot be used when NC_DIAG=y!"
###############################################################################
### ###
### Set C-preprocessor switches representing user options. These are not ###
### specific to any compiler, but are general options for the simulation. ###
### ###
### NOTE: To make the user input more robust, we use regular expression ###
### syntax to match characters in the various Makefile variables. See ###
### this web page for more info: ###
### http://www.tldp.org/LDP/abs/html/x17046.html ###
### ###
###############################################################################
#------------------------------------------------------------------------------
# Compiler settings
#------------------------------------------------------------------------------
# %%%%% OpenMP parallelization (on by default) %%%%%
ifndef OMP
OMP :=yes
endif
# Option to turn off OpenMP for testing
REGEXP :=(^[Nn]|^[Oo])
ifeq ($(shell [[ "$(OMP)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DNO_OMP
endif
# %%%%% Set the HPC variable if we are building for use w/ ESMF/MPI %%%%
ifeq ($(shell [[ "$(MAKECMDGOALS)" =~ "hpc" ]] && echo true),true)
HPC :=yes
export HPC
endif
# %%%%% For HPC, we disable OpenMP and turn on the full vertical grid %%%%%
REGEXP := (^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(HPC)" =~ $(REGEXP) ]] && echo true),true)
IS_HPC :=1
OMP :=no
NO_REDUCED :=yes
# PRECISION :=4
else
IS_HPC :=0
endif
# %%%%% Default to 8-byte precision unless specified otherwise %%%%%
ifndef PRECISION
PRECISION :=8
endif
# %%%%% Default to Timers disabled %%%%%
ifndef TIMERS
TIMERS :=0
endif
# %%%%% Turn on traceback (error stack report) by default %%%%%
ifndef TRACEBACK
TRACEBACK :=yes
endif
# %%%%% Set default compiler %%%%%
# %%%%% Test if mpif90/mpifort is selected (for now assume ifort) %%%%%
REGEXP :=(^[Mm][Pp][Ii])
ifeq ($(shell [[ "$(FC)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DLINUX_IFORT
REG_GNU :=(^[Gg][Nn][Uu])
REG_INTEL :=(^[Ii][Ff][Oo][Rr][Tt])
DISCRIM :=$(word 1,$(shell $(FC) --version ) )
ifeq ($(shell [[ "$(DISCRIM)" =~ $(REG_INTEL) ]] && echo true),true)
COMPILER_FAMILY :=Intel
USER_DEFS += -DLINUX_IFORT
else ifeq ($(shell [[ "$(DISCRIM)" =~ $(REG_GNU) ]] && echo true),true)
COMPILER_FAMILY :=GNU
USER_DEFS += -DLINUX_GFORTRAN
else
$(error Could not determine compiler underlying mpifort/mpif90 )
endif
endif
# %%%%% Test if Intel Fortran Compiler is selected %%%%%
REGEXP :=(^[Ii][Ff][Oo][Rr][Tt])
ifeq ($(shell [[ "$(FC)" =~ $(REGEXP) ]] && echo true),true)
# If we are building GCHP, then set the compile command to "mpifort",
# which invokes the MPI magic. Otherwise set it to $(FC). (bmy, 10/17/16)
COMPILER_FAMILY :=Intel
USER_DEFS += -DLINUX_IFORT
endif
# %%%%% Test if GNU Fortran Compiler is selected %%%%%
REGEXP :=(^[Gg][Ff][Oo][Rr][Tt][Rr][Aa][Nn])
ifeq ($(shell [[ "$(FC)" =~ $(REGEXP) ]] && echo true),true)
COMPILER_FAMILY :=GNU
USER_DEFS += -DLINUX_GFORTRAN
endif
# %%%%% Test if PGI Fortran compiler is selected %%%%%
REGEXP :=(^[Pp][Gg])
ifeq ($(shell [[ "$(FC)" =~ $(REGEXP) ]] && echo true),true)
COMPILER_FAMILY :=PGI
USER_DEFS += -DLINUX_PGI
endif
# Is this GCHP?
ifeq ($(IS_HPC),1)
COMPILE_CMD :=mpifort
else
COMPILE_CMD :=$(FC)
endif
# %%%%% ERROR CHECK! Make sure our compiler selection is valid! %%%%%
REGEXP :=((-DLINUX_)?IFORT|PGI|GFORTRAN)
ifneq ($(shell [[ "$(USER_DEFS)" =~ $(REGEXP) ]] && echo true),true)
$(error $(ERR_CMPLR))
endif
# Once we are sure the compiler is valid, then get the version number
COMPILER_VERSION_LONG :=$(shell $(FC) --version))
COMPILER_VERSION_LONG :=$(sort $(COMPILER_VERSION_LONG))
# For ifort, the 3rd substring of the sorted text is the version number.
# For pgfortran and gfortran, it's the 4th substring.
# NOTE: Future compiler updates may break this algorithm.
REGEXP :=(^[Ii][Ff][Oo][Rr][Tt])
ifeq ($(shell [[ "$(FC)" =~ $(REGEXP) ]] && echo true),true)
COMPILER_VERSION :=$(word 3, $(COMPILER_VERSION_LONG))
else
COMPILER_VERSION :=$(word 4, $(COMPILER_VERSION_LONG))
endif
# Major version number of the compiler
# e.g. for gfortran 8.2.0, this would be "8"
COMPILER_MAJOR_VERSION :=$(word 1,$(subst ., ,$(COMPILER_VERSION)))
#------------------------------------------------------------------------------
# Special flags for enabling experimental or development code
#------------------------------------------------------------------------------
# %%%%% DEVEL: Enable user-added experimental code %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(DEVEL)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DDEVEL
endif
# %%%%% DIAG_DEVEL: Enable experimental code specific to HEMCO %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(DIAG_DEVEL)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DDIAG_DEVEL
BPCH_DIAG :=no
endif
# %%%%% HCO_DEVEL: Enable experimental code specific to HEMCO %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(HCO_DEVEL)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DHCO_DEVEL
endif
# %%%%% HPC_DEVEL: Enable experimental code specific to GCHP %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(HPC_DEVEL)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DHPC_DEVEL
endif
# %%%%% Turn on tendencies computation %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(USE_TEND)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DUSE_TEND
BPCH_DIAG :=no
endif
#------------------------------------------------------------------------------
# GEOS-Chem HP settings
#------------------------------------------------------------------------------
# %%%%% ESMF %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(ESMF)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DESMF_
NO_GRID_NEEDED :=1
endif
# %%%%% EXTERNAL_GRID %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(EXTERNAL_GRID)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXTERNAL_GRID
NO_GRID_NEEDED :=1
endif
# %%%%% EXTERNAL_FORCING %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(EXTERNAL_FORCING)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXTERNAL_FORCING
NO_GRID_NEEDED :=1
endif
#------------------------------------------------------------------------------
# Coupling GEOS-Chem to External Models settings
#------------------------------------------------------------------------------
# %%%%% NO_EXE %%%%%
# Setting NO_EXE=y will inhibit the creation of a final "geos" executable
# and create a "libGeosCore.a" in the lib folder instead.
# Used if you are linking GEOS-Chem routines to be driven by an external model.
# (hplin, 8/23/18)
EXE_NEEDED :=1
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(NO_EXE)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DMODEL_
EXE_NEEDED :=0
endif
#------------------------------------------------------------------------------
# Diagnostic settings
#------------------------------------------------------------------------------
# %%%%% Use netCDF diagnostics if DEVEL=y %%%%%
ifdef DEVEL
BPCH_DIAG :=no
BPCH_TBPC :=no
endif
# %%%%% Turn on bpch code for TPCORE BC's if NEST is defined %%%%%
ifdef NEST
BPCH_TPBC :=yes
endif
# Turn on bpch diagnostics UNLESS specified otherwis
ifdef BPCH_DIAG
BPCH_DIAG :=yes
endif
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(BPCH_DIAG)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DBPCH_DIAG
endif
# %%%%% Turn netCDF diagnostics on by default to save out restart file %%%%%
REGEXP :=(^[Nn]|^[Nn][Oo])
ifeq ($(shell [[ "$(NC_DIAG)" =~ $(REGEXP) ]] && echo true),true)
# Set a flag to denote netCDF diagnostics are off
IS_NC_DIAG :=0
# If netCDF diagnostics have not been explicitly specified, then activate
# bpch diagnostics, bpch timeseries, AND bpch code for nested-grid BC's
USER_DEFS += -DBPCH_DIAG -DBPCH_TIMESER -DBPCH_TPBC
else
# Set a flag to denote netCDF diagnostics are on
IS_NC_DIAG :=1
# Turn on netCDF diagnostics if explicitly specified
USER_DEFS += -DNC_DIAG
# If we are compiling GEOS-Chem "Classic", then also activate all bpch
# timeseries diagnostics. At this point (v11-02) there are some special
# timeseries diagnostics that require local-time binning, which is not
# yet available in the netCDF diagnostic output. This will preserve
# backwards compatibility for the time being. (bmy, 4/11/18)
ifeq ($(IS_HPC),0)
USER_DEFS += -DBPCH_TIMESER
endif
#EEM!!!: Update so that nested-grid BC's will compile by default
USER_DEFS += -DBPCH_TPBC
endif
#------------------------------------------------------------------------------
# KPP settings chemistry solver settings. NOTE: We can't redefine CHEM
# (since it is an environent variable), so define a shadow variable KPP_CHEM.
#------------------------------------------------------------------------------
# Test if the CHEM value is set
IS_CHEM_SET :=0
# %%%%% CHEM=Standard (aka benchmark) %%%%%
REGEXP :=(^[Ss][Tt][Aa][Nn][Dd][Aa][Rr][Dd])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
KPP_CHEM :=Standard
IS_CHEM_SET :=1
NO_REDUCED :=yes
endif
# %%%%% Test if CHEM=SOA (same as Tropchem as of v11-02a) %%%%%
REGEXP :=(^[Ss][Oo][Aa])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
KPP_CHEM :=Tropchem
IS_CHEM_SET :=1
endif
# %%%%% Test if CHEM=SOA_SVPOA %%%%%
REGEXP :=(^[Ss][Oo][Aa]_[Ss][Vv][Pp][Oo][Aa])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
KPP_CHEM :=SOA_SVPOA
IS_CHEM_SET :=1
endif
# %%%%% Test if CHEM=Tropchem %%%%%
REGEXP :=(^[Tt][Rr][Oo][Pp][Cc][Hh][Ee][Mm])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
KPP_CHEM :=Tropchem
IS_CHEM_SET :=1
endif
# %%%%% Test if CHEM=NOx_Ox_HC_Aer_Br (former name for Tropchem) %%%%%
REGEXP :=(^[Nn][Oo][Xx]_[Oo][Xx]_[Hh][Cc]_[Aa][Ee][Rr]_[Bb][Rr])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
KPP_CHEM :=Tropchem
IS_CHEM_SET :=1
endif
# %%%%% Test if CHEM=Custom %%%%%
REGEXP :=(^[Cc][Uu][Ss][Tt][Oo][Mm])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
KPP_CHEM :=Custom
IS_CHEM_SET :=1
endif
# %%%%% Default setting %%%%%
# %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
# NOTE: For clarify in the future, the default setting should be to not set
# KPP_CHEM or IS_CHEM_SET if the CHEM compiler option is not passed. The default
# option would be reserved for specialty simulations that do not require the KPP
# code to be compiled. (mps, 4/22/16)
# %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
ifeq ($(IS_CHEM_SET),0)
KPP_CHEM :=Standard
IS_CHEM_SET :=1
endif
#------------------------------------------------------------------------------
# RRTMG radiative transfer model settings
#------------------------------------------------------------------------------
# %%%%% RRTMG %%%%%
RRTMG_NEEDED :=0
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(RRTMG)" =~ $(REGEXP) ]] && echo true),true)
RRTMG_NEEDED :=1
USER_DEFS += -DRRTMG
endif
#------------------------------------------------------------------------------
# Met field settings
#------------------------------------------------------------------------------
# If the user has omitted MET, then throw an error UNLESS we are trying
# to compile with "clean", "distclean", "realclean", "doc", "help",
# "ncdfcheck", or "libnc". These targets don't depend on the value of MET.
ifndef MET
REGEXP :=($clean|^doc|^help|^libnc|^ncdfcheck|gigc_debug|the_nuclear_option|wipeout|wipeout.|baselib.)
ifeq ($(shell [[ "$(MAKECMDGOALS)" =~ $(REGEXP) ]] && echo true),true)
NO_MET_NEEDED :=1
else
$(error $(ERR_MET))
endif
endif
# We can skip the following checks for targets that don't require MET
ifndef NO_MET_NEEDED
# %%%%% MERRA-2 %%%%%
REGEXP :=(^[Mm][Ee][Rr][Rr][Aa]2|^[Mm][Ee][Rr][Rr][Aa].2)
ifeq ($(shell [[ "$(MET)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DMERRA2
endif
# %%%%% GEOS-FP %%%%%
REGEXP :=(^[Gg][Ee][Oo][Ss][Ff][Pp])|(^[Gg][Ee][Oo][Ss].[Ff][Pp])
ifeq ($(shell [[ "$(MET)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DGEOS_FP
endif
# %%%%% FLEXGRID %%%%%
REGEXP :=(^[Ff][Ll][Ee][Xx][Gg][Rr][Ii][Dd])
ifeq ($(shell [[ "$(MET)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DFLEXGRID
endif
# %%%%% REDUCED VERTICAL GRID (default, unless specified otherwise) %%%%
ifndef NO_REDUCED
NO_REDUCED :=no
endif
REGEXP :=(^[Nn]|^[Nn][Oo])
ifeq ($(shell [[ "$(NO_REDUCED)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DGRIDREDUCED
endif
# %%%%% ERROR CHECK! Make sure our MET selection is valid! %%%%%
REGEXP :=(\-DGEOS_FP|\-DMERRA2)
ifneq ($(shell [[ "$(USER_DEFS)" =~ $(REGEXP) ]] && echo true),true)
$(error $(ERR_MET))
endif
endif # NO_MET_NEEDED
#------------------------------------------------------------------------------
# Horizontal grid settings
#------------------------------------------------------------------------------
# We can skip the following checks for targets that don't require GRID
# If the user has omitted GRID, then throw an error UNLESS we are trying
# to compile with "clean", "distclean", "realclean", "doc", "help",
# "ncdfcheck", or "libnc". These targets don't depend on the value of GRID.
ifndef NO_GRID_NEEDED
ifndef GRID
REGEXP :=($clean|^doc|^help|^libnc|^ncdfcheck|gigc_debug|the_nuclear_option|wipeout|wipeout.|baselib.|^wipeout)
ifeq ($(shell [[ $(MAKECMDGOALS) =~ $(REGEXP) ]] && echo true),true)
NO_GRID_NEEDED :=1
else
$(error $(ERR_GRID))
endif
endif
endif
# We can skip the following checks for targets that don't require GRID
ifndef NO_GRID_NEEDED
# %%%%% 4 x 5 %%%%%
REGEXP :=(^4.5|^4\.0.5\.0)
ifeq ($(shell [[ "$(GRID)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DGRID4x5
endif
# %%%%% 2 x 2.5 %%%%%
REGEXP :=(^2.25|^2.2\.5|^2\.0.2\.5)
ifeq ($(shell [[ "$(GRID)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DGRID2x25
endif
# %%%%% 0.5 x 0.625 %%%%%
REGEXP :=(^05.0625|^0\.5.0\.625)
ifeq ($(shell [[ "$(GRID)" =~ $(REGEXP) ]] && echo true),true)
# Ensure that MET=merra2
REGEXP :=(^[Mm][Ee][Rr][Rr][Aa]2)|(^[Mm][Ee][Rr][Rr][Aa].2)|(^[Ff][Ll][Ee][Xx][Gg][Rr][Ii][Dd])
ifneq ($(shell [[ "$(MET)" =~ $(REGEXP) ]] && echo true),true)
$(error When GRID=05x0625, you can only use MET=merra2)
endif
# Ensure that a nested-grid option is selected
# NOTE: For safety's sake: if a nested-grid option is selected then
# define the BPCH_TPBC cpp switch even if BPCH_TPBC=n was passed.
ifndef NEST
$(error $(ERR_NEST))
else
NEST_NEEDED :=1
USER_DEFS += -DBPCH_TPBC -DGRID05x0625
endif
endif
# %%%%% 0.25 x 0.3125 %%%%%
REGEXP :=(^025.03125|^0\.25.0\.3125)
ifeq ($(shell [[ "$(GRID)" =~ $(REGEXP) ]] && echo true),true)
# Ensure that MET=geosfp
REGEXP :=(^[Gg][Ee][Oo][Ss][Ff][Pp])|(^[Gg][Ee][Oo][Ss].[Ff][Pp])|(^[Ff][Ll][Ee][Xx][Gg][Rr][Ii][Dd])
ifneq ($(shell [[ "$(MET)" =~ $(REGEXP) ]] && echo true),true)
$(error When GRID=025x03125, you can only use MET=geosfp)
endif
# Ensure that a nested-grid option is selected
# NOTE: For safety's sake: if a nested-grid option is selected then
# define the BPCH_TPBC cpp switch even if BPCH_TPBC=n was passed.
ifndef NEST
$(error $(ERR_NEST))
else
NEST_NEEDED :=1
USER_DEFS += -DBPCH_TPBC -DGRID025x03125
endif
endif
# %%%%% ERROR CHECK! Make sure our GRID selection is valid! %%%%%
REGEXP := ((\-DGRID)?4x5|2x25|1x125|05x0666|05x0625|025x03125)
ifneq ($(shell [[ "$(USER_DEFS)" =~ $(REGEXP) ]] && echo true),true)
$(error $(ERR_GRID))
endif
#------------------------------------------------------------------------------
# Nested grid settings
#------------------------------------------------------------------------------
# %%%%% China (CH) %%%%%
REGEXP :=(^[Cc][Hh])
ifeq ($(shell [[ "$(NEST)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DNESTED_CH
endif
# %%%%% Asia (AS) %%%%%
REGEXP :=(^[Aa][Ss])
ifeq ($(shell [[ "$(NEST)" =~ $(REGEXP) ]] && echo true),true)
# Ensure that GRID=05x0625
REGEXP :=(^05.0625|^0\.5.0\.625)
ifneq ($(shell [[ "$(GRID)" =~ $(REGEXP) ]] && echo true),true)
$(error NEST=as can only be used with GRID=05x0625)
endif
USER_DEFS += -DNESTED_AS
endif
# %%%%% Europe (EU) %%%%%
REGEXP :=(^[Ee][Uu])
ifeq ($(shell [[ "$(NEST)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DNESTED_EU
endif
# %%%%% North America (NA) %%%%%
REGEXP :=(^[Nn][Aa])
ifeq ($(shell [[ "$(NEST)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DNESTED_NA
endif
# %%%%% Custom (CU) %%%%%
REGEXP :=(^[Cc][Uu])
ifeq ($(shell [[ "$(NEST)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DNESTED_CU
endif
# %%%%% ERROR CHECK! Make sure our NEST selection is valid! %%%%%
ifdef NEST_NEEDED
REGEXP :=((\-DNESTED_)?AS|CH|EU|NA|CU)
ifneq ($(shell [[ "$(USER_DEFS)" =~ $(REGEXP) ]] && echo true),true)
$(error $(ERR_NEST))
endif
endif
endif # NO_GRID_NEEDED
#------------------------------------------------------------------------------
# Coupled grid settings (yanyy,6/18/14)
#------------------------------------------------------------------------------
# %%%%% Couple %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(COUPLE)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE
endif
# %%%%% China (CH) and 4x5 %%%%%
REGEXP :=(^4.5[Cc][Hh]|^4\.0.5\.0[Cc][Hh])
ifeq ($(shell [[ "$(COUPLECH)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_4x5_CH
endif
# %%%%% Europe (EU) and 4x5 %%%%%
REGEXP :=(^4.5[Ee][Uu]|^4\.0.5\.0[Ee][Uu])
ifeq ($(shell [[ "$(COUPLEEU)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_4x5_EU
endif
# %%%%% North America (NA) and 4x5 %%%%%
REGEXP :=(^4.5[Nn][Aa]|^4\.0.5\.0[Nn][Aa])
ifeq ($(shell [[ "$(COUPLENA)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_4x5_NA
endif
# %%%%% SE Asia (SE) and 4x5 %%%%%
REGEXP :=(^4.5[Nn][Aa]|^4\.0.5\.0[Nn][Aa])
ifeq ($(shell [[ "$(COUPLESE)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_4x5_SE
endif
# %%%%% China (CH) and 2x2.5 %%%%%
REGEXP :=(^2.25[Cc][Hh]|^2.2\.5[Cc][Hh]|^2\.0.2\.5[Cc][Hh])
ifeq ($(shell [[ "$(COUPLECH)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_2x25_CH
endif
# %%%%% Europe (EU) and 2x2.5 %%%%%
REGEXP :=(^2.25[Ee][Uu]|^2.2\.5[Ee][Uu]|^2\.0.2\.5[Ee][Uu])
ifeq ($(shell [[ "$(COUPLEEU)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_2x25_EU
endif
# %%%%% North America (NA) and 2x2.5 %%%%%
REGEXP :=(^2.25[Nn][Aa]|^2.2\.5[Nn][Aa]|^2\.0.2\.5[Nn][Aa])
ifeq ($(shell [[ "$(COUPLENA)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_2x25_NA
endif
# %%%%% SE Asia (SE) and 2x2.5 %%%%%
REGEXP :=(^2.25[Nn][Aa]|^2.2\.5[Nn][Aa]|^2\.0.2\.5[Nn][Aa])
ifeq ($(shell [[ "$(COUPLESE)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_2x25_SE
endif
# %%%%% ERROR CHECK! Make sure our NEST selection is valid! %%%%%
ifdef COUPLE_NEEDED
REGEXP :=((\-DEXCHANGE_)?CH|NA|EU)
ifneq ($(shell [[ "$(USER_DEFS)" =~ $(REGEXP) ]] && echo true),true)
$(error $(ERR_COUPLE))
endif
endif
#------------------------------------------------------------------------------
# Aerosol microphysics settings
# At present, TOMAS or APM cannot be compiled with NC_DIAG=y! (bmy, 8/7/18)
#------------------------------------------------------------------------------
# %%%%% TOMAS, 30 bins (default) %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TOMAS)" =~ $(REGEXP) ]] && echo true),true)
ifeq ($(IS_NC_DIAG),1)
$(error $(ERR_MICPHYS))
else
USER_DEFS += -DTOMAS
endif
endif
# %%%%% TOMAS, 40 bins %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TOMAS40)" =~ $(REGEXP) ]] && echo true),true)
ifeq ($(IS_NC_DIAG),1)
$(error $(ERR_MICPHYS))
else
USER_DEFS += -DTOMAS -DTOMAS40
endif
endif
# %%%%% TOMAS, 15 bins %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TOMAS15)" =~ $(REGEXP) ]] && echo true),true)
ifeq ($(IS_NC_DIAG),1)
$(error $(ERR_MICPHYS))
else
USER_DEFS += -DTOMAS -DTOMAS15
endif
endif
# %%%%% TOMAS, 12 bins %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TOMAS12)" =~ $(REGEXP) ]] && echo true),true)
ifeq ($(IS_NC_DIAG),1)
$(error $(ERR_MICPHYS))
else
USER_DEFS += -DTOMAS -DTOMAS12
endif
endif
# %%%%% APM %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(APM)" =~ $(REGEXP) ]] && echo true),true)
ifeq ($(IS_NC_DIAG),1)
$(error $(ERR_MICPHYS))
else
USER_DEFS += -DAPM
endif
endif
#------------------------------------------------------------------------------
# Special chemistry settings
#------------------------------------------------------------------------------
# Activate Global Terrestrial Mercury Model (GTMM) if necessary
GTMM_NEEDED :=0
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(GTMM_Hg)" =~ $(REGEXP) ]] && echo true),true)
GTMM_NEEDED :=1
USER_DEFS += -DGTMM_Hg
endif
# Option to turn off ISORROPIA for testing
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(NO_ISO)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DNO_ISORROPIA
endif
#------------------------------------------------------------------------------
# Performance profiling
#------------------------------------------------------------------------------
# Compile with TAU profiler (from ParaTools, Inc)
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TAU_PROF)" =~ $(REGEXP) ]] && echo true),true)
COMPILE_CMD :=tau_f90.sh
endif
# Compile with GNU profiler (gprof)
IS_GPROF :=0
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(GPROF)" =~ $(REGEXP) ]] && echo true),true)
IS_GPROF :=1
endif
#------------------------------------------------------------------------------
# Add test for mass conservation
#------------------------------------------------------------------------------
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(MASSCONS)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DMASSCONS
endif
###############################################################################
### ###
### Set linker commands for local and external libraries (incl. netCDF) ###
### ###
###############################################################################
# Test if we have found the nf-config file, which indicates a separate
# netCDF-Fortran build. IS_NF_CONFIG=0 indicates that we found nf-config.
IS_NF_CONFIG :=$(shell test -f $(GC_F_BIN)/nf-config; echo $$?)
# Test for GEOS-Chem-Libraries or onboard netCDF libraries
ifeq ($(shell [[ "$(GC_LIB)" =~ GEOS-Chem-Libraries ]] && echo true),true)
#-----------------------------------------------------------------------
# %%%%% We are using the GEOS-Chem-Libraries package %%%%%
#
# Both netCDF-Fortran and netCDF-C library files are in the same path
#-----------------------------------------------------------------------
# NetCDF include command: 1 library path
NC_INC_CMD := -I$(GC_INCLUDE)
# NetCDF link command: Add a workaround so that $GC_LIB will specify
# the library path. This should prevent any issues caused by building
# the GEOS-Chem-Libraries in one location and moving them to another.
NC_LINK_CMD := $(shell $(GC_BIN)/nf-config --flibs)
NC_LINK_CMD += $(shell $(GC_BIN)/nc-config --libs)
NC_LINK_CMD := $(filter -l%,$(NC_LINK_CMD))
NC_LINK_CMD :=-L$(GC_LIB) $(NC_LINK_CMD)
else
ifeq ($(IS_NF_CONFIG),0)
#-----------------------------------------------------------------------
# %%%%% We are using the onboard netCDF libraries %%%%%
#
# NetCDF-Fortran and NetCDF-C library files are in different paths,
# which is typical of netCDF versions 4.2 and higher.
#-----------------------------------------------------------------------
# NetCDF include command: 2 library paths
NC_INC_CMD := -I$(GC_INCLUDE) -I$(GC_F_INCLUDE)
# NetCDF link command: 2 sets of link commands
NC_LINK_CMD := $(shell $(GC_F_BIN)/nf-config --flibs)
NC_LINK_CMD += $(shell $(GC_BIN)/nc-config --libs)
else
#-----------------------------------------------------------------------
# %%%%% We are using the onboard netCDF libraries %%%%%
#
# NetCDF-Fortran and NetCDF-C library files are in the same path,
# which is typical netCDF versions earlier than 4.2.
#-----------------------------------------------------------------------
# NetCDF include command: 1 library path