wrong option provided in the manual

[flokraft85]

Operating System

Ubuntu 22.04

Other Linux

No response

Workflow Version

v2.6.0

Workflow Execution

Command line (Local)

Other workflow execution

No response

EPI2ME Version

No response

CLI command run

No response

Workflow Execution - CLI Execution Profile

None

What happened?

Hi,
in the Pipeline overview, point 3. Small variant calling with Clair3 the wrong option for clair3 model override is provided.
"--override_basecall_cfg" is written in the text, but should be "--override_basecaller_cfg".

Best,
Florian

Relevant log output

n/a

Application activity log entry

Were you able to successfully run the latest version of the workflow with the demo data?

yes

Other demo data information

[SamStudio8]

Nice spot - thanks!

…

On Wed, 5 Feb 2025, 20:15 Florian Kraft, ***@***.***> wrote: Operating System Ubuntu 22.04 Other Linux *No response* Workflow Version v2.6.0 Workflow Execution Command line (Local) Other workflow execution *No response* EPI2ME Version *No response* CLI command run *No response* Workflow Execution - CLI Execution Profile None What happened? Hi, in the Pipeline overview, point 3. Small variant calling with Clair3 the wrong option for clair3 model override is provided. "--override_basecall_cfg" is written in the text, but should be "--override_basecaller_cfg". Best, Florian Relevant log output n/a Application activity log entry Were you able to successfully run the latest version of the workflow with the demo data? yes Other demo data information — Reply to this email directly, view it on GitHub <#240>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAIN6ORVKFXDPDM6IFFS7DL2OJWNTAVCNFSM6AAAAABWR5TQJ2VHI2DSMVQWIX3LMV43ASLTON2WKOZSHAZTGOBXGY3TSNI> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>