From 17737c1d6ffbe89dfd34e29ca0b66612961eb12d Mon Sep 17 00:00:00 2001
From: Bede Constantinides <bede.constantinides@nanoporetech.com>
Date: Wed, 11 Sep 2024 15:23:20 +0000
Subject: [PATCH] Fix resource requirements [CW-4917]

---
 CHANGELOG.md                    | 5 +++++
 README.md                       | 4 ++--
 docs/03_compute_requirements.md | 4 ++--
 main.nf                         | 4 ++--
 nextflow_schema.json            | 4 ++--
 5 files changed, 13 insertions(+), 8 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 307b843..03cb86a 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -4,6 +4,11 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+
+## [Unreleased]
+### Fixed
+- Updated recommended (32GB) and minimum (16GB, with `--assembly false`) memory requirements.
+
 ## [v1.1.2]
 ### Changed
 - Reconcile workflow with wf-template v5.2.5.
diff --git a/README.md b/README.md
index bdaec6f..a857664 100644
--- a/README.md
+++ b/README.md
@@ -21,12 +21,12 @@ We expect data to be generated from a mixed population sample hence the use of t
 Recommended requirements:
 
 + CPUs = 4
-+ Memory = 16GB
++ Memory = 32GB
 
 Minimum requirements:
 
 + CPUs = 4
-+ Memory = 10GB
++ Memory = 16GB
 
 Approximate run time: 45 minutes
 
diff --git a/docs/03_compute_requirements.md b/docs/03_compute_requirements.md
index 110547f..1d21fd1 100644
--- a/docs/03_compute_requirements.md
+++ b/docs/03_compute_requirements.md
@@ -1,12 +1,12 @@
 Recommended requirements:
 
 + CPUs = 4
-+ Memory = 16GB
++ Memory = 32GB
 
 Minimum requirements:
 
 + CPUs = 4
-+ Memory = 10GB
++ Memory = 16GB
 
 Approximate run time: 45 minutes
 
diff --git a/main.nf b/main.nf
index b3b2164..f9793c5 100644
--- a/main.nf
+++ b/main.nf
@@ -125,7 +125,7 @@ process makeConsensus {
 process flyeAssembly {
     label "wfmpx"
     cpus 4
-    memory '28GB'
+    memory '31GB'
     input:
         tuple val(sample_id), val(type), path("${sample_id}.bam"), path("${sample_id}.bam.bai")
         path reference
@@ -159,7 +159,7 @@ process noAssembly{
 process medaka_polish {
     label "medaka"
     cpus 2
-    memory '16GB'
+    memory '15GB'
     input:
         tuple val(sample_id),
         val(type),
diff --git a/nextflow_schema.json b/nextflow_schema.json
index c2b11c1..8f0a31d 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -218,11 +218,11 @@
     "resources": {
         "recommended": {
             "cpus": 4,
-            "memory": "16GB"
+            "memory": "32GB"
         },
         "minimum": {
             "cpus": 4,
-            "memory": "10GB"
+            "memory": "16GB"
         },
         "run_time": "45 minutes",
         "arm_support": true