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Isoform-level expression count matrix? #92

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sheetsvicky opened this issue Apr 23, 2024 · 2 comments
Open

Isoform-level expression count matrix? #92

sheetsvicky opened this issue Apr 23, 2024 · 2 comments
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enhancement New feature or request

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@sheetsvicky
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Ask away!

Currently, *gene_expression.counts.tsv and *.expression.counts.tsv files are available in the output. I'm curious about how I can obtain the count matrix at the isoform level (chr.stringtie.xxxx). Are there any result files or additional tools that provide that information? Thank you!
@sheetsvicky sheetsvicky added the question Further information is requested label Apr 23, 2024
@eseffar
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eseffar commented May 10, 2024

Same question here. That would be great to have a way to generate those files.

@cjw85 cjw85 added enhancement New feature or request and removed question Further information is requested labels May 14, 2024
@cjw85
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cjw85 commented May 14, 2024

We don't currently have a timeline for adding this, though we will consider it for the next major release.

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@cjw85 @sheetsvicky @eseffar